Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02881 ATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACTCAAAAAGGTTTCCAGAATCTTTGTGGCAAGGATTGCCCCATCAGTAACAGAAGCAGTTTTTAGGAGTCATTTTGAGAAATACGGTGATATAATAGATTTGTTTATGCCAAAGGGTCGAGGATCTAAACCACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAGCTTGATGAAAGAAATCCATGAACTGGGAGGATCTGATTTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGAAGCACTTGGTGCTCCGACTATGTATGACCATCCCAGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCATCTTCCCCCGGAGGCAACCACAGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAATAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCATGTCTCTCAAAGATCTCATGAAATTTGTGGACATCAGGTTGCCATAGATTCAGCTGCACCTCTTGATGATGCAGGGCCTAGTGGCAATACTATGGTGACTAGTATGGATTCTTTCAGGGCATATGGCGCTCCTGCGAGGCCATATTTTGATCATAGTCCTGCGAGGCCATATTTTGATCAAAGTTCTGCAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCAAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTGTAAGGCCTTATGTTGATCAAAGTCCCGTGAGGCCTTATGGGAGGATGTACGATAACTTGGATCTCGACAAGTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1035 0.4261 MLEVKVATPKEEMRALKKVSRIFVARIAPSVTEAVFRSHFEKYGDIIDLFMPKGRGSKPHRGIGFITFASADSVESLMKEIHELGGSDLVVDRATPKEDDFKPIGRTRTSQGGYGAYNNAYISAPTRYEALGAPTMYDHPSSIYGRGEPVRGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVNKSGHRGFGFVTFADYGVADHVSQRSHEICGHQVAIDSAAPLDDAGPSGNTMVTSMDSFRAYGAPARPYFDHSPARPYFDQSSARPYFDRSSIRPYFDQSSIRPYFDRSSVRPYVDQSPVRPYGRMYDNLDLDKWGYGVASRRPSRADWRYRPY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02881 344 SUPERFAMILY RNA-binding domain, RBD 18 117 IPR035979 GO:0003676
Vivi1g02881 344 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 2 132 - -
Vivi1g02881 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 231 IPR000504 GO:0003723
Vivi1g02881 344 SMART rrm1_1 156 227 IPR000504 GO:0003723
Vivi1g02881 344 SMART rrm1_1 21 92 IPR000504 GO:0003723
Vivi1g02881 344 SUPERFAMILY RNA-binding domain, RBD 154 244 IPR035979 GO:0003676
Vivi1g02881 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 214 IPR000504 GO:0003723
Vivi1g02881 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 80 IPR000504 GO:0003723
Vivi1g02881 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 96 IPR000504 GO:0003723
Vivi1g02881 344 Gene3D - 4 128 IPR012677 -
Vivi1g02881 344 Gene3D - 152 235 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02881 Vivi-Chr1 62657496 62664342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02881 11 99 Eukaryotic Initiation Factors Gene Family AT2G36660 32.609 9.55e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02881 K14411 - qsa:O6P43_033824 421.394