Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02879 ATGGAGGAGATGAGGGCACTCAAAAAGGTTTCCAGAATCTTTGTGGCAAGGATTGCCCCATCAGTAACAGAAGCAGTTTTTAGGAGTCATTTTGAGAAATACGGTGATATAATAGATTTGTTTATGCCAAAGGGTCGAGGATCTAAACCACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAGCTTGATGAAAGAAATCCATGAACTGGGAGGATCTGATTTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGAAGCACTTGGTGCTCCGACTATGTATGACCATCCCAGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCATCTTCCCCCGGAGGCAACCACAGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAATAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCATGTCTCTCAAAGATCTCATGAAATTTGTGGACATCAGGTTGCCATAGATTCAGCTGCACCTCTTGATGATGCAGGGCCTAGTGGCAATACTATGGTGACTAGTATGGATTCTTTCAGGGCATATGGCGCTCCTGCGAGGCCATATTTTGATCATAGTCCTGCGAGGCCATATTTTGATCAAAGTTCTGCAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCAAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTGTAAGGCCTTATGTTGATCAAAGTCCCGTGAGGCCTTATGGGAGGATGTACGATAACTTGGATCTCGACAAGTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1008 0.4236 MEEMRALKKVSRIFVARIAPSVTEAVFRSHFEKYGDIIDLFMPKGRGSKPHRGIGFITFASADSVESLMKEIHELGGSDLVVDRATPKEDDFKPIGRTRTSQGGYGAYNNAYISAPTRYEALGAPTMYDHPSSIYGRGEPVRGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVNKSGHRGFGFVTFADYGVADHVSQRSHEICGHQVAIDSAAPLDDAGPSGNTMVTSMDSFRAYGAPARPYFDHSPARPYFDQSSARPYFDRSSIRPYFDQSSIRPYFDRSSVRPYVDQSPVRPYGRMYDNLDLDKWGYGVASRRPSRADWRYRPY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02879 335 Gene3D - 1 119 IPR012677 -
Vivi1g02879 335 Gene3D - 143 226 IPR012677 -
Vivi1g02879 335 SMART rrm1_1 147 218 IPR000504 GO:0003723
Vivi1g02879 335 SMART rrm1_1 12 83 IPR000504 GO:0003723
Vivi1g02879 335 SUPERFAMILY RNA-binding domain, RBD 10 108 IPR035979 GO:0003676
Vivi1g02879 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 87 IPR000504 GO:0003723
Vivi1g02879 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 71 IPR000504 GO:0003723
Vivi1g02879 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 205 IPR000504 GO:0003723
Vivi1g02879 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 222 IPR000504 GO:0003723
Vivi1g02879 335 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 8 123 - -
Vivi1g02879 335 SUPERFAMILY RNA-binding domain, RBD 145 235 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02879 Vivi-Chr1 62657494 62664342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02879 2 90 Eukaryotic Initiation Factors Gene Family AT2G36660 32.609 9.14e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02879 K14411 - qsa:O6P43_033824 402.905