Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02878 ATGGAGCAGCGAAAGCTTATGGTTACGGGTATCCCGTGGGACGTTGATAATGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGACCTAGAAGATTGTTATGTTATAAAGGAGCGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTTACATTTACATCAGTGGATGATGCTAAGAATGTGCTATCCAGTGAACACATTCTGGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACTCAAAAAGGTTTCCAGAATCTTTGTGGCAAGGATTGCCCCATCAGTAACAGAAGCAGTTTTTAGGAGTCATTTTGAGAAATACGGTGATATAATAGATTTGTTTATGCCAAAGGGTCGAGGATCTAAACCACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAGCTTGATGAAAGAAATCCATGAACTGGGAGGATCTGATTTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGAAGCACTTGGTGCTCCGACTATGTATGACCATCCCAGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCATCTTCCCCCGGAGGCAACCACAGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAATAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCATGTCTCTCAAAGATCTCATGAAATTTGTGGACATCAGGTTGCCATAGATTCAGCTGCACCTCTTGATGATGCAGGGCCTAGTGGCAATACTATGGTGACTAGTATGGATTCTTTCAGGGCATATGGCGCTCCTGCGAGGCCATATTTTGATCATAGTCCTGCGAGGCCATATTTTGATCAAAGTTCTGCAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCAAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTGTAAGGCCTTATGTTGATCAAAGTCCCGTGAGGCCTTATGGGAGGATGTACGATAACTTGGATCTCGACAAGTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1248 0.4279 MEQRKLMVTGIPWDVDNEGLKEYMSKFGDLEDCYVIKERSTGRSRGFGYVTFTSVDDAKNVLSSEHILGNRMLEVKVATPKEEMRALKKVSRIFVARIAPSVTEAVFRSHFEKYGDIIDLFMPKGRGSKPHRGIGFITFASADSVESLMKEIHELGGSDLVVDRATPKEDDFKPIGRTRTSQGGYGAYNNAYISAPTRYEALGAPTMYDHPSSIYGRGEPVRGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVNKSGHRGFGFVTFADYGVADHVSQRSHEICGHQVAIDSAAPLDDAGPSGNTMVTSMDSFRAYGAPARPYFDHSPARPYFDQSSARPYFDRSSIRPYFDQSSIRPYFDRSSVRPYVDQSPVRPYGRMYDNLDLDKWGYGVASRRPSRADWRYRPY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02878 415 Gene3D - 85 199 IPR012677 -
Vivi1g02878 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vivi1g02878 415 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vivi1g02878 415 Gene3D - 1 84 IPR012677 -
Vivi1g02878 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Vivi1g02878 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
Vivi1g02878 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 151 IPR000504 GO:0003723
Vivi1g02878 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Vivi1g02878 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 285 IPR000504 GO:0003723
Vivi1g02878 415 SUPERFAMILY RNA-binding domain, RBD 91 283 IPR035979 GO:0003676
Vivi1g02878 415 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Vivi1g02878 415 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 2 191 - -
Vivi1g02878 415 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vivi1g02878 415 SMART rrm1_1 227 298 IPR000504 GO:0003723
Vivi1g02878 415 SMART rrm1_1 92 163 IPR000504 GO:0003723
Vivi1g02878 415 Gene3D - 223 306 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02878 Vivi-Chr1 62657483 62664342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02878 6 276 Eukaryotic Initiation Factors Gene Family AT3G16380 21.864 3.37e-13 69.3