Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02877 ATGGAGCAGCGAAAGCTTATGGTTACGGGTATCCCGTGGGACGTTGATAATGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGACCTAGAAGATTGTTATGTTATAAAGGAGCGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTTACATTTACATCAGTGGATGATGCTAAGAATGTGCTATCCAGTGAACACATTCTGGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGGTCGAGGATCTAAACCACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAGCTTGATGAAAGAAATCCATGAACTGGGAGGATCTGATTTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGAAGCACTTGGTGCTCCGACTATGTATGACCATCCCAGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCATCTTCCCCCGGAGGCAACCACAGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAATAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCATGTCTCTCAAAGATCTCATGAAATTTGTGGACATCAGGTTGCCATAGATTCAGCTGCACCTCTTGATGATGCAGGGCCTAGTGGCAATACTATGGTGACTAGTATGGATTCTTTCAGGGCATATGGCGCTCCTGCGAGGCCATATTTTGATCATAGTCCTGCGAGGCCATATTTTGATCAAAGTTCTGCAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCAAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTGTAAGGCCTTATGTTGATCAAAGTCCCGTGAGGCCTTATGGGAGGATGTACGATAACTTGGATCTCGACAAGTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1119 0.4316 MEQRKLMVTGIPWDVDNEGLKEYMSKFGDLEDCYVIKERSTGRSRGFGYVTFTSVDDAKNVLSSEHILGNRMLEVKVATPKGRGSKPHRGIGFITFASADSVESLMKEIHELGGSDLVVDRATPKEDDFKPIGRTRTSQGGYGAYNNAYISAPTRYEALGAPTMYDHPSSIYGRGEPVRGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVNKSGHRGFGFVTFADYGVADHVSQRSHEICGHQVAIDSAAPLDDAGPSGNTMVTSMDSFRAYGAPARPYFDHSPARPYFDQSSARPYFDRSSIRPYFDQSSIRPYFDRSSVRPYVDQSPVRPYGRMYDNLDLDKWGYGVASRRPSRADWRYRPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02877 372 SUPERFAMILY RNA-binding domain, RBD 4 126 IPR035979 GO:0003676
Vivi1g02877 372 SUPERFAMILY RNA-binding domain, RBD 182 272 IPR035979 GO:0003676
Vivi1g02877 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vivi1g02877 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 259 IPR000504 GO:0003723
Vivi1g02877 372 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 4 82 - -
Vivi1g02877 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Vivi1g02877 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 242 IPR000504 GO:0003723
Vivi1g02877 372 SMART rrm1_1 184 255 IPR000504 GO:0003723
Vivi1g02877 372 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vivi1g02877 372 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vivi1g02877 372 Gene3D - 85 128 IPR012677 -
Vivi1g02877 372 Gene3D - 180 263 IPR012677 -
Vivi1g02877 372 Gene3D - 1 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02877 Vivi-Chr1 62657481 62664342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02877 3 88 C2H2 Transcription Factor Family AT2G19380 32.955 6.06e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02877 K14411 - gmx:100795240 455.292