Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02876 ATGGACATGATCTCAATGATGATGCTAATGGAAAAGTTCCCTGATAATTTCTCTGAACCTTCCTCTTACCAAGAAACTATCAATGGAACTTCCAATACTGTTCCATTATTTAACTTCTCTCCACAAACTTTGACTACTGATCCATATCTACACTCCAATGTCAGTTTCAACAATACTATCCAACAACCATCTTCTCTTTATAACCCTAATTCTTCTGATAAGAAGAACTCCATGGCGGCCATGAGGGAAATGATATTCAGAATAGCAGTGATGCAACCGGTGCATATCGATCCGGAGTCGATTAGGCCACCGAAGAGGAGGAACGTGAAGATATCGAAGGATCCGCAGAGCGTAGCGGCGAGGCATAGAAGGGAGAGGATAAGTGAAAGGATAAGAATATTGCAGAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTGGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAGGTTCAGAGTTTGGAACAAGCTGGGGCTAATAATAGATCATCACACATTGGTGCTGGTGGTGTTATGAATAATTTTAATGTGATGAATTATTCTTCTATGATGAAGGGTTGTCAACCTTTTCAAATGGTAGGGTCTACTTCTAAACAATTGCTTAGCTAG 648 0.3966 MDMISMMMLMEKFPDNFSEPSSYQETINGTSNTVPLFNFSPQTLTTDPYLHSNVSFNNTIQQPSSLYNPNSSDKKNSMAAMREMIFRIAVMQPVHIDPESIRPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANNRSSHIGAGGVMNNFNVMNYSSMMKGCQPFQMVGSTSKQLLS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02876 215 CDD bHLH_AtIND_like 112 168 - -
Vivi1g02876 215 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 32 209 IPR045843 GO:0003700|GO:0006355
Vivi1g02876 215 Gene3D - 110 179 IPR036638 GO:0046983
Vivi1g02876 215 FunFam BHLH transcription factor 114 178 - -
Vivi1g02876 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 170 IPR036638 GO:0046983
Vivi1g02876 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Vivi1g02876 215 Pfam Helix-loop-helix DNA-binding domain 120 160 IPR011598 GO:0046983
Vivi1g02876 215 SMART finulus 117 166 IPR011598 GO:0046983
Vivi1g02876 215 Coils Coil 150 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02876 Vivi-Chr1 62608892 62609827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02876 6 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 58.500 6.36e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02876 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02876 - - vvo:131624678 383.259