Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02872 ATGGATTGGATACGAGGAGAATCAGTTGGGAGAGGAAGCTTTGCAACTGTTAATCTAGTCTTACCCAAAGGAAGTTCAAATTCCACTCTTTTTCCTTCTCCGACAGCTGTTAAAACCTCCGAGGTTTCAACCTCGTATTCCCTCAAAAACGAGAGACATGTTCTCGATCGTTTAGGTTCTTGTCAACAAATCATTCGTTGTTTCGGAGATGATTACACCTTCGAGAATGGCGAAAAGTATTACAATTTATTTCTCGAGTATGCTTCCGCCGGTACTCTCGCCGATCAAGTTAAATTCCACGGTGGCCGGATTCCGGAACAGAATATTCGCGGTTACACCAGGTCAATTGTTGAAGGTCTTCACCATATTCACAGCAATGGATTCGTTCATTGCGATATTAAGCTTCAAAACATTCTGGTATTCGATGACGGTGAAATCAAAATCGCTGATTTTGGTCTTGCGAAAAAATCAGGGGAAGAACAGAGTAGGTTCGAATGCAGGGGAACTCCACTTTTTATGTCGCCGGAATCAGTTAACCACGGGGAGCATGAGTCGCCGGCGGATGTTTGGGCACTTGGATGTGCGGTGGTGGAGATGGTGACAGGAAAACCAGTTTGGAATTTGGAGAAAGATTCAAATATGTGGTCGTTGATGCTTCGAATTGGTGCCGGAGAAGAATCACCGATGATACCCGAAGATTTATCAAAAGAAGGAAAAGATTTTGTTGAGAAATGTTTAGTTAAGGATCCAAGAAAGAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTCATTGAAGAAGTGAAGAATGTTAACGAACCATCACCAAGAAATCATTTTGATTTCAATGATTGGGTTTCTAGTGTTAGTGATTCGACTCCAAGTTCGCCGGAATCTGAAGAGTCGTGTCAATGGAATTATGATTCTTGTTCTTTTTCCGGCGGGAATCGGCTCCGGCAGCTTGTGACGGTTGAAGTGCCAGTGAGTTGGTCGGAAACAGATAGTTGGATTAGTGTTAGGTGA 1023 0.4321 MDWIRGESVGRGSFATVNLVLPKGSSNSTLFPSPTAVKTSEVSTSYSLKNERHVLDRLGSCQQIIRCFGDDYTFENGEKYYNLFLEYASAGTLADQVKFHGGRIPEQNIRGYTRSIVEGLHHIHSNGFVHCDIKLQNILVFDDGEIKIADFGLAKKSGEEQSRFECRGTPLFMSPESVNHGEHESPADVWALGCAVVEMVTGKPVWNLEKDSNMWSLMLRIGAGEESPMIPEDLSKEGKDFVEKCLVKDPRKRWTAEMLLNHPFIEEVKNVNEPSPRNHFDFNDWVSSVSDSTPSSPESEESCQWNYDSCSFSGGNRLRQLVTVEVPVSWSETDSWISVR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02872 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vivi1g02872 340 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02872 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 289 - -
Vivi1g02872 340 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Vivi1g02872 340 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02872 340 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Vivi1g02872 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Vivi1g02872 340 CDD STKc_MAPKKK 2 265 - -
Vivi1g02872 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 298 - -
Vivi1g02872 340 Pfam Protein kinase domain 6 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02872 Vivi-Chr1 62536069 62537416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02872 1 340 MAP Kinase Kinase Kinase AT4G36950 54.131 5.61e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi1g02872 Pkinase 1.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02872 - - gmx:100782937 452.21