Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02871 ATGGATTGGGTACGAGGAGAATCACTTGGTAGAGGAACCTTTGCAACTGTTAATCTAGTCTTACCCAAAGGTGCTTCGAATTCTACTCTATTTCCTTCTCCGACAGCCGTCAAAACATCCGAGGTTTCAACCTCGTATACCCTTAAAAACGAGAGACATGTTCTTGATTGTCTAGGTTCCTGTCAACAAATGATTCGCTGTTTCGGAGATGATTATACCTTTGAGAATGGCCACGAGTATTACAATTTGTTTCTTGAATACGCTTCCGCTGGAACTCTTGCTGATCAAGTTAAATTCCACGGTGGCCGGATTCCAGAACTAAATATTCGCGGTTACACCAGGTCAATCGTGGAGGGCCTTAACCATATTCATAGCAATGGATTCGTTCATTGTGATATAAAGCTTCAAAACATTCTTGTATTTCATGATGGTGAAATCAAAATCGCTGATTTTGGTTTAGCTAAAAAATCAGGGGAAGAGCAGAGTGAAAAACAGAGGTTCGAATGCAGGGGTACTCCACTGTATATGTCGCCGGAATCAGTGATCCACGGAGAGCATGAGTCGCCGGCAGATATTTGGGCACTTGGGTGTGCCATGGTGGAGATGATGACGGGAAAACCAGCATGGAATATAGAGAAGGATTCGAATATGTTGTCGTTGTTGCTTCAAATTGGTACAGGAGAAAAATCACCGATGATACCAGAAGATTTGTCAAAAGAAGGAAAAGATTTTGTTGAGAAATGTTTAGTTAAGGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTATTGAAGACGTGAAGAATGTTAACGAACCATCACCAAGAAATCATTTTGATTTCAATGATTGGGTTTCTAGTGTTGGTGATGCAGCTCCAAGCTCCCCGGAATATGAAGAATTGTGTCAATGGGATTTTGATTATTGTTCTTGTTTGGCAGCGGATCGGCTCAGGCAGCTTGTGACGGTTGAATTGCCCGTTAGTTGGTCAGAATCAGACAGTTGGATTAATGTTAGGTCAGAATGA 1038 0.4171 MDWVRGESLGRGTFATVNLVLPKGASNSTLFPSPTAVKTSEVSTSYTLKNERHVLDCLGSCQQMIRCFGDDYTFENGHEYYNLFLEYASAGTLADQVKFHGGRIPELNIRGYTRSIVEGLNHIHSNGFVHCDIKLQNILVFHDGEIKIADFGLAKKSGEEQSEKQRFECRGTPLYMSPESVIHGEHESPADIWALGCAMVEMMTGKPAWNIEKDSNMLSLLLQIGTGEKSPMIPEDLSKEGKDFVEKCLVKDPRKRWTAEMLLNHPFIEDVKNVNEPSPRNHFDFNDWVSSVGDAAPSSPEYEELCQWDFDYCSCLAADRLRQLVTVELPVSWSESDSWINVRSE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02871 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vivi1g02871 345 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Vivi1g02871 345 SMART serkin_6 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02871 345 Gene3D Transferase(Phosphotransferase) domain 1 2 300 - -
Vivi1g02871 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Vivi1g02871 345 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02871 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 324 - -
Vivi1g02871 345 CDD STKc_MAPKKK 2 268 - -
Vivi1g02871 345 ProSiteProfiles Protein kinase domain profile. 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02871 Vivi-Chr1 62506817 62508476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02871 1 343 MAP Kinase Kinase Kinase AT4G36950 52.422 2.13e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi1g02871 Pkinase 4.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02871 - - gmx:100798607 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02871 1 62506817 62508476 Vivi1g02871 1 62506817 62508476 ECH