Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02870 ATGGATTGGGTACGAGGAAAATCAGTTGGTAGAGGAACCTTTGGAACTGTTAATCTAGTCTTACCCAAAGGTGCTTCGAATTCTACTCTATTTCCTTCTCCGACAGCCGTCAAAACATCCGAGGCTTCAACCTCGTATTCCCTCAAAAACGAAAGACATGTTCTCCAGCATCTAGGTTCCTGTCAACAAATCATTCGTTGTTTCGGAGATGATTACACCTTCGAGAATGGCCACGAGTATTACAATTTATTTCTTGAATACGCTTCCGCTGGAACTCTCGCCGATCAAGTTAAATTCCACGGTGGCCGGATTCCAGAACTAAACATTTGCGGTTACATCAGATCAATTGTGGAGGGTCTTAACCATATTCATAGCAATGGATTCGTTCATTGTGATATAAAGCTCCAAAACATTCTTGTATTTCATGATGGTGAAATCAAAATCGCTGATTTTGGTCTTGCTAGAAAATCAGGGGAGGAACAGAGTAGGTTCGAATGCAGGGGTACTCCACTGTATATGTCGCCGGAATCAGTGATCCACGGAGAGCATGAGTCGCCGGCAGATATTTGGGCACTTGGGTGTGCCATAGTGGAGATGATGACTGGAAAACCAGCATGGAATATAGAGAAGGATTCGAATATGTTGTCGTTGTTGCTTCAAATTGGTACAGGAGAAAAATCACCGATGATACCAGAAGATTTGTCAAAAGAAGGAAAAGATTTTGTTGAGAAATGTTTAGTTAAGGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGAATCATCCATTTATTGAAGACGTGAAGAATGTTAACGAACCATCACCAAGAAATCATTTTGATTTCAATGACTGGGTTTCAAGTGTTGGTGATGCAGCTCCAAGCTCCCCGGAATTTGAAGAATCGTGTCAGTGGGATTTTGATAATTGTTCTTGTTCACCAGCGGATCGGCTCCGGCAGCTTGTGACGGTTGAAGTGCCAGTGAGTTGGTCGGAATCAGATAGTTGGATTAATGTTAGGTGA 1023 0.4242 MDWVRGKSVGRGTFGTVNLVLPKGASNSTLFPSPTAVKTSEASTSYSLKNERHVLQHLGSCQQIIRCFGDDYTFENGHEYYNLFLEYASAGTLADQVKFHGGRIPELNICGYIRSIVEGLNHIHSNGFVHCDIKLQNILVFHDGEIKIADFGLARKSGEEQSRFECRGTPLYMSPESVIHGEHESPADIWALGCAIVEMMTGKPAWNIEKDSNMLSLLLQIGTGEKSPMIPEDLSKEGKDFVEKCLVKDPRKRWTAEMLLNHPFIEDVKNVNEPSPRNHFDFNDWVSSVGDAAPSSPEFEESCQWDFDNCSCSPADRLRQLVTVEVPVSWSESDSWINVR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02870 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vivi1g02870 340 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02870 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 298 - -
Vivi1g02870 340 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02870 340 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Vivi1g02870 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Vivi1g02870 340 CDD STKc_MAPKKK 2 265 - -
Vivi1g02870 340 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02870 340 Gene3D Transferase(Phosphotransferase) domain 1 2 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02870 Vivi-Chr1 62492017 62493272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02870 1 340 MAP Kinase Kinase Kinase AT4G36950 52.557 2.21e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi1g02870 Pkinase 3.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02870 - - gmx:100798607 458.759