Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02858 ATGGGTGAGGAAAACCAGGTCATCGAAAACAAACCTGCCCTTTACAAGGGTCTCCTTAACAGTGATGCACTTTATAATTATATACTTGAAACCAATGTGTTTCCGAGAGAGCATCCATGTTTGAAGGAGCTTCGTGAGATGACAGAAATACACTCTCAGGGCATTATGCTTATACCTGCTGATGAAGGACAGTTTTTAAGCTTGTTGATTAAGCTGATGAATGCAAAGAAGACAATGGAGATTGGTGTGTACACTGGCTACTCTCTTCTCTCCACTGCTCTTGCTCTTCCCTCTGATGGAACGGAAAATAACAAGGGAGCATTTGATTTTATTTTTGTGGATGCTGATAAGAATAACTATTTAAACTATCACAAGAGAGTAATTGAGCTTGTTAAAGTTGGGGGATTGATCGGATACGATAATACCTTATGGTGTGGATCAGTGGTGGCTCCTCCTGATACTATTATTTATGAAACCATTCGGAACTTACGTGAATATGTGATTGAGTTTAACAAGTATATAGCTCAAGATTCAAGATTTGAGGTTTGTCTGGTTTCTATAGGAGATGGGATCACCCTATGCCGCCGCATCAAGTGA 597 0.3987 MGEENQVIENKPALYKGLLNSDALYNYILETNVFPREHPCLKELREMTEIHSQGIMLIPADEGQFLSLLIKLMNAKKTMEIGVYTGYSLLSTALALPSDGTENNKGAFDFIFVDADKNNYLNYHKRVIELVKVGGLIGYDNTLWCGSVVAPPDTIIYETIRNLREYVIEFNKYIAQDSRFEVCLVSIGDGITLCRRIK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02858 198 Pfam O-methyltransferase 37 100 IPR002935 GO:0008171
Vivi1g02858 198 Pfam O-methyltransferase 103 197 IPR002935 GO:0008171
Vivi1g02858 198 Gene3D Vaccinia Virus protein VP39 101 198 IPR029063 -
Vivi1g02858 198 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 196 IPR029063 -
Vivi1g02858 198 Gene3D Vaccinia Virus protein VP39 8 100 IPR029063 -
Vivi1g02858 198 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 197 IPR002935 GO:0008171
Vivi1g02858 198 PANTHER O-METHYLTRANSFERASE-RELATED 102 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02858 Vivi-Chr1 62165038 62167530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02858 3 197 Monolignol Biosynthesis Gene Families AT4G34050 51.046 5.24e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02858 K00588 - gmx:100795858 256.529