Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02836 ATGTGGGATCTTAACGGTTCACCGTTTAAGCGAAAAGACGAAGAGTCACAAGGATGTTATTTGCAAAATACATCATTAGATGGAGATGACAGAAAAAGGGTTGGTGTTGGTGGATCTGTTTCGAATTCTAGCTCTTCCGCTATCGTAATCGAAGAAGATTCAGAAGAAGATAACAACAACAACAAAAGCATCATGGTAAAGAAGAAAAACAGCAAGATATTTGGTTTTTCTGTTACACAAGAAAAAGAACAAGAGCAAGAGCAAGAAGAAGAAGAATCTTTAGAAAGTGGAAATTTTCCTGTGACGAGAAACTTCTTTCCTATGGATCAAGAAGGTGAAAACATGGTTGTAGCATCTAGTGGTGGAAATGGAACATCTTCTTGTGCTTCTAGTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCGGAAACACTTGGAAGTGGAAAATCAATGGAAGTTTCATCTTCTGCACAACCTATGAAAAAGAGTCGTAGAGGACCAAGGTCAAGGAGTTCACAGTATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATCAAGTTTAGAGGAGTTGAGGCAGACATAAACTTCAACATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTGACAAAGGAAGAATTTGTACATGTTCTTCGTCGACAAAGCACTGGTTTTCCAAGAGGGAGTTCTAAGTATAGAGGTGTTACATTGCACAAATGTGGAAGATGGGAGGCTAGAATGGGTCAATTTTTAGGAAAAAAGTATGTTTATCTGGGCTTGTTTGACACAGAAGTTGAAGCTGCAAGGGCGTATGACAAAGCAGCGATAAAATGCAATGGAAAAGAGGCTGTAACTAATTTTGAACCAAGCATATATGATAGTGAGCTTAATCCTGGAGAACCAGCAAGTAGTGGTGGTGATCACAATTTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGCACATGAACAATACTCAAGCATTTGGGAATCACACAAATCATGATCAATCTAACTGGCAGAATGGGGGAAACATAAACAAGCCTAAGCTTGTGAATATATTACCAAAACCATATAATAGACCAAGCAACATGGAAGCATATGGAAGAGATTTGCATGGAGAGAATGAAGCACTGAGAATGCTAAGTCAAACTCATCTTCATTCTTCATCGTCGAACGATATTCATCGATATGGTCCCTTTCGAGATCAATCACAAATGCTTCACAGTTTTGCACACACTCATCACCAACCAAATTTTCATTTTCCCAGCAGCAGCTACGGAGGCCGAGTCGGAAGTGATCTTACATTATCAACAAGCAATCAGCAACCGCAACCGCAATGGCAATCAGGATCACATTATTTATCATCTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATCAGAGCACCCTCTTCTCAAACTTGGCTGCACAAAAATGGCTACCACACTCTCATGAGACCCTCTTGA 1581 0.3997 MWDLNGSPFKRKDEESQGCYLQNTSLDGDDRKRVGVGGSVSNSSSSAIVIEEDSEEDNNNNKSIMVKKKNSKIFGFSVTQEKEQEQEQEEEESLESGNFPVTRNFFPMDQEGENMVVASSGGNGTSSCASSFPRAHWVGVKFCQSETLGSGKSMEVSSSAQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFEPSIYDSELNPGEPASSGGDHNLDLSLGNSSSKHMNNTQAFGNHTNHDQSNWQNGGNINKPKLVNILPKPYNRPSNMEAYGRDLHGENEALRMLSQTHLHSSSSNDIHRYGPFRDQSQMLHSFAHTHHQPNFHFPSSSYGGRVGSDLTLSTSNQQPQPQWQSGSHYLSSAAAASSGFPPQIRAPSSQTWLHKNGYHTLMRPS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02836 526 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Vivi1g02836 526 Gene3D AP2/ERF domain 267 326 IPR036955 GO:0003700|GO:0006355
Vivi1g02836 526 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 MobiDBLite consensus disorder prediction 328 404 - -
Vivi1g02836 526 MobiDBLite consensus disorder prediction 346 384 - -
Vivi1g02836 526 FunFam AP2-like ethylene-responsive transcription factor 175 234 - -
Vivi1g02836 526 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 MobiDBLite consensus disorder prediction 1 17 - -
Vivi1g02836 526 MobiDBLite consensus disorder prediction 455 491 - -
Vivi1g02836 526 MobiDBLite consensus disorder prediction 1 66 - -
Vivi1g02836 526 CDD AP2 267 327 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 ProSiteProfiles AP2/ERF domain profile. 268 325 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 MobiDBLite consensus disorder prediction 79 101 - -
Vivi1g02836 526 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Vivi1g02836 526 CDD AP2 176 233 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 426 - -
Vivi1g02836 526 SMART rav1_2 268 331 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Vivi1g02836 526 MobiDBLite consensus disorder prediction 151 165 - -
Vivi1g02836 526 FunFam AP2-like ethylene-responsive transcription factor 267 327 - -
Vivi1g02836 526 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Vivi1g02836 526 MobiDBLite consensus disorder prediction 151 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02836 Vivi-Chr1 61483656 61486934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02836 1 358 AP2-EREBP Transcription Factor Family AT4G36920 64.516 1.75e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi1g02836 AP2 9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02836 K09284 - gmx:100792442 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02836 1 61483656 61486934 Vivi1g02836 1 61483656 61486934 ECH
Vivi2g03355 2 138385163 138389270 Vivi1g02836 1 61483656 61486934 PCT