Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02825 ATGGCAGTAGAACTCATGACAGGTTACAACACAACCAAAACCTTCACTTCCATAGCCGAACAAAATGCTGTCCAAGAAGCAGCCTCCGGCTTAGAAAGCGTCGAAAAACTCATCCAATTACTCTCCCAAGCACGCCACAAATACCACACCCCTTCATCTTCCTCTTCCTTTTCACCTTCAAACCCCAACACCACCACCACCACCAACGCTTCCATGGAGATTGAAAGAGACTGCAAAGCCGTCGCTGACATCGCTGTCTCCAAATTCAAACGCGTTATTTCACTTCTCGAAAAAACCAGAACCGGTCACGCTCGTTTCAGAAAAGCCCCGTTACCACAACCTTCTGATCAACCAATCTTCAACGCTACCCCTCTTCAACAGATTCCACCGGCGCTACCATCATCAACGACCCTTCACCGTCCTATAATCAAGAGAAACGATTCCTCCAAAACCCTTAATTTTTCGTACTCCTCCGCTGCTAATTCCTTCATTTCTTCACTCACCGGCGAGACAGACATCAAGCAGCAACCGTCGTCTTCTTCGCCGGCCGGGGGTTTTCAGATCACGAATCTGTCTCATGTTTCGTCTGTTGGTAAGCCTCCACTGTCCTCTTCTTCGATGAAAAGAAAGTGTAGCTCTGAAACTTTGGGGTCTGGAAAGTGCGGTAGTTCTTCTAGCCGCTGTCATTGTTCCAAAAAAAGTAGGAAATTAAGATTGAAGAGGGTTGTTAGGGTTCCTGCAATCAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCCTGGAGAAAATATGGTCAGAAACCTATCAAGGGTTCACCTCATCCAAGAGGATACTACAAGTGCAGTAGTGTGAGAGGATGTCCAGCAAGAAAACATGTAGAGAGAGCACTAGATGATGCATCCATGTTGGTGGTAACCTATGAAGGAGAGCACAACCACTCACTTTCTGCAGCAGATGCAACTAATCTGATTCTAGAGTCATCTTAA 990 0.4616 MAVELMTGYNTTKTFTSIAEQNAVQEAASGLESVEKLIQLLSQARHKYHTPSSSSSFSPSNPNTTTTTNASMEIERDCKAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQPSDQPIFNATPLQQIPPALPSSTTLHRPIIKRNDSSKTLNFSYSSAANSFISSLTGETDIKQQPSSSSPAGGFQITNLSHVSSVGKPPLSSSSMKRKCSSETLGSGKCGSSSSRCHCSKKSRKLRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADATNLILESS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02825 329 SMART WRKY_cls 256 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02825 329 Gene3D WRKY domain 241 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g02825 329 Pfam WRKY DNA -binding domain 258 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02825 329 Pfam Plant zinc cluster domain 208 254 IPR018872 -
Vivi1g02825 329 SUPERFAMILY WRKY DNA-binding domain 253 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g02825 329 ProSiteProfiles WRKY domain profile. 251 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g02825 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 322 IPR044810 GO:0003700
Vivi1g02825 329 MobiDBLite consensus disorder prediction 197 216 - -
Vivi1g02825 329 FunFam WRKY transcription factor 65 240 317 - -
Vivi1g02825 329 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02825 Vivi-Chr1 61252209 61254136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02825 1 314 WRKY Transcription Factor Family AT2G24570 40.634 3.74e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g02825 WRKY 9.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02825 - - qsa:O6P43_033850 408.683