Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02814 ATGTCTCTCACACACCAAAACCAACAACAACAAGAACAACAACAATCTCCTATTCTGGATACCCTTCTCTGTGAAGAACGAAACACGTTTGAAGATGATGATTCTGATGCAACCGTTACTGATTCTGAAACCGTTTTTGATGACCCATCTGGGGCAAAGCTGCAATCTTTGCCTTTGTTTTGGGAAAACGATGAGCTTGTTTCGTTGATTTCTAAAGAGGGTGAGACCCATTTGTGTTGTGGTAATGTTATTGTTGATGGATCTTTGGATGAGATTCGTGTGGAGGCTGTTGGCTGGATTTCGAAAGTTTGTGCTCATTATGGGTTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGATAGATTTATTACTAGTTTGAGGTTTCAGAAGGATAAACCATGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAGGAAACCCATGTGCCACTTCTTTTGGATTTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAGACTATACAGAGAATGGAGCTTTTGGTGTTATCTACTTTGAAATGGAGGATGCATCCGGTGACACCAATTTCGTTCTTTGAACACATTGTTAGAAGGCTTGGTTTGAAGAGCCGTTTGCACTGGGAGTTTATGTGGCGTTGTGAGAGGGTTCTTCTTCATGTCATTGCTGATTCTAAGGTTATGATGAATTATCTTCCTTCTACATTGGCTGCTGCTATGATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTAATCAGCTAATGGGTTTACTAAAGATTAGTGAGGAACAAGTAAACCAATGCTACAAGCTTATGCTGAAGCTATTAGTTTGCGATGATGGCATTTATAGTCTCCACCATAAACGGAAGCGAGTAACTGAACCAAGTAGCCCGGGTGGTGTCATTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACCGTGGCATCGTCTGTATCGCTTTCACTGCAGCCGATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGACTTCCTTCTGTGAATCGTGTTTCTGTTGATGTTCTTAATAGCCCTCGTTAA 1113 0.4079 MSLTHQNQQQQEQQQSPILDTLLCEERNTFEDDDSDATVTDSETVFDDPSGAKLQSLPLFWENDELVSLISKEGETHLCCGNVIVDGSLDEIRVEAVGWISKVCAHYGFSTLTTVLAVNYFDRFITSLRFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDFQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCERVLLHVIADSKVMMNYLPSTLAAAMMIHVIKEIEPFNATEYINQLMGLLKISEEQVNQCYKLMLKLLVCDDGIYSLHHKRKRVTEPSSPGGVIDASFSCDSSNDSWTVASSVSLSLQPMFKRSRAQDQQMRLPSVNRVSVDVLNSPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02814 370 Gene3D - 194 284 - -
Vivi1g02814 370 Pfam Cyclin, C-terminal domain 195 292 IPR004367 -
Vivi1g02814 370 Gene3D - 91 193 - -
Vivi1g02814 370 SUPERFAMILY Cyclin-like 196 298 IPR036915 -
Vivi1g02814 370 FunFam D3-type cyclin 86 193 - -
Vivi1g02814 370 Pfam Cyclin, N-terminal domain 91 192 IPR006671 -
Vivi1g02814 370 SMART Cyclin_C_2 195 324 IPR004367 -
Vivi1g02814 370 CDD CYCLIN_AtCycD-like_rpt2 195 286 - -
Vivi1g02814 370 PANTHER CYCLINS 69 291 IPR039361 -
Vivi1g02814 370 CDD CYCLIN_AtCycD-like_rpt1 93 190 - -
Vivi1g02814 370 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Vivi1g02814 370 FunFam CYCLIN D32 194 284 - -
Vivi1g02814 370 SMART cyclin_7 98 186 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02814 Vivi-Chr1 60949932 60951899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02814 18 360 Core Cell Cycle Gene Families AT5G67260 51.685 5.92e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02814 K14505 - gmx:100785030 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01873 3 30307320 30308913 Vivi1g02814 1 60949932 60951899 ECH
Vivi1g02814 1 60949932 60951899 Vivi1g02814 1 60949932 60951899 ECH