Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02804 ATGGATCGGATCAAAGGCCCATGGAGCCCCGAAGAAGACGACGCCCTAAAGAACCTCGTCGAGCGCCATGGCCCCCGTAACTGGTCCCTCATCAGCCGCGCTATCCCCGGCCGCTCCGGTAAATCCTGCCGCCTCCGCTGGTGTAATCAGCTTTCTCCTCAAGTTGAGCATCGCGCTTTTACACCTGAAGAAGATAGTCTCATCATCAGAGCACACGCCCAGGTCGGTAACAAATGGGCCACGATAGCACGGTTACTCTCTGGTAGAACCGATAACGCTATCAAAAACCACTGGAACTCAACTCTCAAGCGAAAGTGCTCGTCCTTCATGGCTTCCGACGATCCATCCTTCAATCCTCAACCGCTCAAACGCTCCGCCAGCGTCGGCGCGCCGGGGAGTCCGTCCGGTTCTGATTTAAGCGATTCCGGAAATCATATCTTCCGTCCTGTTCCCGTTCCGATTCCGGTTCGATTACCTGTCGAATCAACATCTGAACCAGAACCAGAGGAAGACGACGGTCCATTTACTTCGCTTTCGCTCTCGCTCTCTCTCCCAGGCTTGGATACATCAGATGCGGTGAACAATCACCGTCCTGCGGCGGTGGTTCCGACTAGTCCATCTCCTTCTCCGTTAAGTGCTGTAACGGCTTCTGTGGCGGCGAAGGTTTCGCAAGAAGTTGGAATCGGAGCGATGAATTTGAGTGGTGAATTCATGGCGGTTATGCAGGAGATGATAAAGAATGAAGTGAGGAGTTACATGGAAGAGCTTAATGGAATGTGTTTTCAGGGTGTGGATAGGCTCAGAAACGTTTCTGCTAAACCAATTGGGATTAACAGGGTTGATTCCTAA 849 0.523 MDRIKGPWSPEEDDALKNLVERHGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDSLIIRAHAQVGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFMASDDPSFNPQPLKRSASVGAPGSPSGSDLSDSGNHIFRPVPVPIPVRLPVESTSEPEPEEDDGPFTSLSLSLSLPGLDTSDAVNNHRPAAVVPTSPSPSPLSAVTASVAAKVSQEVGIGAMNLSGEFMAVMQEMIKNEVRSYMEELNGMCFQGVDRLRNVSAKPIGINRVDS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02804 282 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Vivi1g02804 282 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Vivi1g02804 282 Pfam Myb-like DNA-binding domain 8 67 - -
Vivi1g02804 282 CDD SANT 7 49 IPR001005 -
Vivi1g02804 282 MobiDBLite consensus disorder prediction 111 146 - -
Vivi1g02804 282 FunFam MYB transcription factor 5 56 - -
Vivi1g02804 282 MobiDBLite consensus disorder prediction 158 180 - -
Vivi1g02804 282 SMART sant 56 104 IPR001005 -
Vivi1g02804 282 SMART sant 4 53 IPR001005 -
Vivi1g02804 282 PANTHER MYB PROTEIN-RELATED 5 163 - -
Vivi1g02804 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Vivi1g02804 282 CDD SANT 59 102 IPR001005 -
Vivi1g02804 282 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Vivi1g02804 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Vivi1g02804 282 Gene3D - 58 125 - -
Vivi1g02804 282 Gene3D - 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02804 Vivi-Chr1 60480974 60482254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02804 2 256 MYB Transcription Factor Family AT5G67300 52.330 6.20e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g02804 Myb_DNA-bind_6 5.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02804 K09422 - gmx:100806145 322.013