Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02772 ATGTATCCAAACCCACATGAACAATCACAACCACTGTTATTGAAAGAGCGAGAAGATGAAAAGCCACGAGAAACAGCATACGAATCGTCAGAAAAGATAGTGGTGGTTGGAATCGACGAGTTAGAAAATGGTGGCACTGAGGTGCCACCATTTTCATGGAAGAAGCTATGGCTATTCACAGGTCCTGGATTTCTAATGAGTATAGGTTTTTTGGATCCAGGGAACATAGAAGGGGACCTTCAAGCTGGTGCCATTGCTGGGTATTCTTTGTTGTGGCTTCTTATGTGGGCTACGGCAATGGGGCTTTTGATTCAGCTTTTGTCGGCGAGGCTTGGTGTGGCTACAGGGAAGCATTTGGCTGAGCTTTGCAGGGAGGAGTATCCTAGGTGGGCTAGGAATGTGCTTTGGGTTATGGCTGAGTTTGCTCTGATTGGTTCTGATATACAAGAGGTTATTGGCAGTGCTATTGCTATTAGGATTCTTAGTAATGGGGTTATTCCTCTTTGGGGTGGTGTTGTTATTACTGCTCTTGATTGTTTTATTCTTCTGTTTCTTGAGAACTATGGTGTGAGATCATTGGAAGCTTTTTTTGCTGTTCTCATTGGCATAATGGCACTAGCTTTCGCTTGGATGTTCGGCGAGGCAAAGCCAAGTGGCGAGGAACTTTTAGTTGGCATTTTGGTTCCAAAAATAAGCTCCAGAACCATACAACAAGCTGTTGGAGTTGTAGGCTGTCTTATAATGCCTCACAATGTATTCTTGCATTCTGCCCTTGTTCAATCGCGTAAAGTTGATCGCACCAACAAAGGTCGAGTTCAAGAAGCACTTAACTATTACTCTATAGAGTCTACACTTGCCTTGATTGTCTCCTTTGGCATTAACATACTTGTAACCTCCGTGTTTGCGAAAGGGTTTTATGGTTCTGAAATGGCAAATAATATCGGCCTTGAAAACGCGGGACAGTATCTTCAACAGACTTATGGAGGCGGAGTTCTTCCGATATTGTATATATGGGGTATCGGGTTGTTAGCAGCCGGTCAAAGTAGTACTATAACCGGTACCTATGCCGGACAATTTATCATGGGAGGTTTTCTTAACTTAAGGATGAAGAAATGGATGAGGGCGTTGATCACTCGAAGTTCTGCAATAGTTCCAACCATGATAGTTGCTCTTTGGTTTGATACTAGAGAGGATTCACTAGATGTTCTGAATGAGTGGCTTAATGTACTTCAGTCTGTTCAAATTCCATTTGCACTTATTCCTTTGCTTTGTTTGGTGTCAAAGGAGCAGATCATGGGCACTTTCAAAATCGGCACTGTCCTCAAGGTGATTTCTTGGTGTGTGGCTGCTCTTGTGACAGTGATTAACGGTTATCTGTTGCTGGAATTCTTCTCATCTGAAGTGAATGGAATGATAGTTGGTGCTATAGTGTGTGTAGTAACTGCTGCATATGTTGCATTCATCATATACCTTATTTTGCGTGCAACTACATTCTCTGCTATTCTCGGTTTGACAAAGCCTAACTCGGCCACGGCCAAAGGTGATACTTCCCTTGGATAG 1560 0.4301 MYPNPHEQSQPLLLKEREDEKPRETAYESSEKIVVVGIDELENGGTEVPPFSWKKLWLFTGPGFLMSIGFLDPGNIEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPRWARNVLWVMAEFALIGSDIQEVIGSAIAIRILSNGVIPLWGGVVITALDCFILLFLENYGVRSLEAFFAVLIGIMALAFAWMFGEAKPSGEELLVGILVPKISSRTIQQAVGVVGCLIMPHNVFLHSALVQSRKVDRTNKGRVQEALNYYSIESTLALIVSFGINILVTSVFAKGFYGSEMANNIGLENAGQYLQQTYGGGVLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRMKKWMRALITRSSAIVPTMIVALWFDTREDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGTVLKVISWCVAALVTVINGYLLLEFFSSEVNGMIVGAIVCVVTAAYVAFIIYLILRATTFSAILGLTKPNSATAKGDTSLG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02772 519 Hamap Divalent metal cation transporter MntH [mntH]. 42 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 MobiDBLite consensus disorder prediction 1 26 - -
Vivi1g02772 519 NCBIfam Nramp family divalent metal transporter 61 430 - -
Vivi1g02772 519 MobiDBLite consensus disorder prediction 11 26 - -
Vivi1g02772 519 Pfam Natural resistance-associated macrophage protein 76 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi1g02772 519 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 48 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02772 Vivi-Chr1 59743575 59746204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02772 39 499 Inorganic Solute Cotransporters AT2G23150 78.618 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02772 K21398 - gmx:100812381 826.624