Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02743 ATGAGTTGCAATGGCTGCCGTGTTCTTCGAAAGGGTTGCAGTGAGTCGTGTATTTTGAGACCTTGTTTACAGTGGATTGAAACTCCAGAAGCTCAAGGTCACGCTACTGTTTTCGTAGCTAAATTCTTCGGTCGCGCTGGTCTTATGAACTTTATTTCCAACGTCCCTGAACCACAAAGACCAGCTTTGTTTCAATCTTTACTATTTGAAGCGTGTGGAAGAACGGTTAATCCTGTAAACGGTGCCGTGGGACTTCTCTGGACTGGGAACTGGCACGTGTGTCAGGCGGCGGTCGAGACGGTTCTTCGCGGCGGCATGCTTAGGCCTTTACCGGAGTTGACAGGTATGAACGCGCCTCCTACGTCTGATGAAGCATCGGAAGCGGAAGACGCTGGCACAGACGCAATTTGGAGGATCCGAGATCCGAATCAGAATTTTCGGTTACCGAGCTCGAGATCTAATAATAAAGTCGCTTCTGGTGTGAAACGCAGACGATCGGAGGATTTTGTGAAGATTCCGGCGGCAATTAACCTTGATCTCCGATTGACGCCGATTTTTCAGCAGAAAGGAGTGGAGAACCGCCAGCCTGGATCGCCGTCGATGACGTCGGAGGAATCCGTGACTACGACGGCGTGTTTGGAGGCTGGGATCGGAGAAAAGTGGAGTCACGGTGGTGATAGGAAAGTTCTCAACCTTTTCATATGA 705 0.5021 MSCNGCRVLRKGCSESCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMNFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGMLRPLPELTGMNAPPTSDEASEAEDAGTDAIWRIRDPNQNFRLPSSRSNNKVASGVKRRRSEDFVKIPAAINLDLRLTPIFQQKGVENRQPGSPSMTSEESVTTTACLEAGIGEKWSHGGDRKVLNLFI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02743 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 215 - -
Vivi1g02743 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vivi1g02743 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02743 Vivi-Chr1 58980864 58982210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02743 1 233 AS2 family AT3G49940 56.693 2.67e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g02743 LOB 6.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02743 - - gmx:100802764 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03448 2 140914608 140915887 Vivi1g02743 1 58980864 58982210 ECH
Vivi1g02743 1 58980864 58982210 Vivi1g02743 1 58980864 58982210 ECH
Vivi1g02743 1 58980864 58982210 Vivi2g03448 2 140914608 140915887 PCT