Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02739 ATGGCCGTAAGACAATTCCAATTCAACTTCTCGCGCGATAGATTGGTCTTTCTCTTTCGAACATCTCAATCTCATTCTCATTCCTTCTTTCGTAATAATAAATCCCCCCAATCTCTCATCTCTTTCCCCCCCTCTTCCTTCCTCCGCCGCCTAGCTGCGTCCGCAGCAACTCCGTCGCCGCCTTCAATCCATCTCCGCCGTCCGCGCCCTCCTCCTCCCGACGACATGGCGCAGAAGTTCGGAAAATCCACTCGCCGCCCCGGCGCTTCCTCCAAGGCCAGGGTTTATGCCGATATCAACGTCGTTCGCCCTAAGGAATATTGGGACTACGAAACCCTCACCGTTCAGTGGGGGGAGCAGGATGATTATGAGGTGGTGAGGAAGGTTGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGGGTTCACTGTACTGATAATGAAAAATGTGTTATCAAGATCCTCAAACCTGTGAAGAAGAAGAAGATCAAGAGAGAAATCAAAATATTACAGAATCTTTGCGGAGGGCCCAATATTGTTAAGTTGCTTGACATTGTTAGAGACCAGCAATCGAAGACCCCAAGTCTCATATTTGAATATGTCAATAACACTGATTTTAAAGTACTTTATCCTTTATTGTCAGACTATGACATACGTTACTATATCTATGAACTTCTAAAGGCCTTGGATTACTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCACAATGTAATGATTGACCATGCTCAGCGTAAGCTCCGCCTTATTGATTGGGGGCTTGCAGAATTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCTTCAAGATATTTCAAAGGTCCGGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCTGGGATTATATTCCGGAAGGAGCCGTTCTTTTATGGACATGATAACTATGATCAACTTGTCAAGATAGCTAGGGTACTTGGGACAGATGAATTAAATGCATATTTGAATAAGTATCGCATTGAGTTGGACCCACATCTTGCAGCACTTATTGGGAGGCACAGCCGAAAGCCATGGCAAAGGTTCATTAATGTTGAAAATCAGCACTTGACTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTACGATACGATCACCAAGACCGGCCCACTGCAAAGGAAGCCATGGCCCATCCATACTTCAATCCAATTAGAAGTGCAGAAAGTAGTAGAGCTCGCGCACATTGA 1269 0.45 MAVRQFQFNFSRDRLVFLFRTSQSHSHSFFRNNKSPQSLISFPPSSFLRRLAASAATPSPPSIHLRRPRPPPPDDMAQKFGKSTRRPGASSKARVYADINVVRPKEYWDYETLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPLLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHAQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGIIFRKEPFFYGHDNYDQLVKIARVLGTDELNAYLNKYRIELDPHLAALIGRHSRKPWQRFINVENQHLTVPEAVDFVDKLLRYDHQDRPTAKEAMAHPYFNPIRSAESSRARAH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02739 422 FunFam Casein kinase II subunit alpha 200 411 - -
Vivi1g02739 422 Gene3D Transferase(Phosphotransferase) domain 1 200 408 - -
Vivi1g02739 422 Gene3D Phosphorylase Kinase; domain 1 123 199 - -
Vivi1g02739 422 SUPERFAMILY Protein kinase-like (PK-like) 95 411 IPR011009 -
Vivi1g02739 422 Pfam Protein kinase domain 123 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02739 422 CDD STKc_CK2_alpha 104 408 IPR045216 GO:0004674|GO:0006468
Vivi1g02739 422 PANTHER CASEIN KINASE II SUBUNIT ALPHA 86 417 IPR045216 GO:0004674|GO:0006468
Vivi1g02739 422 SMART serkin_6 123 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02739 422 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Vivi1g02739 422 MobiDBLite consensus disorder prediction 53 91 - -
Vivi1g02739 422 ProSiteProfiles Protein kinase domain profile. 123 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02739 422 FunFam Casein kinase II subunit alpha 109 199 - -
Vivi1g02739 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02739 Vivi-Chr1 58860058 58867623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02739 121 411 Core Cell Cycle Gene Families AT1G20930 30.032 1.92e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vivi1g02739 Pkinase 3.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02739 K03097 - qsa:O6P43_024562 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02739 1 58860058 58867623 Vivi1g02739 1 58860058 58867623 ECH