Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02728 ATGGATACATTGTTTAGGCTAGTCAATTTTCAACAACAACAACAACATCATCAATATCAACCCGATCCTTCCCTCAACTCCACCACCACCTTAACAACATCAAGTAGCTCTAGATCCTCAAGACAAACCACAACAACAACCACAAACTATCATTATTACCAACATCAAGAAGAAGACGAAGAATGCTTCAACAACTTCTATTACATGGATCATAACAATACCAATGATGAAGACTTATCTTCCTCTTCTTCTAAACAACACTACTACAATTATCCTTATGATCAACAACAAACTCACCCTCATCATCATCATGTATCCACTACTACAATCACTACTTCTTCTCCAAACACAAACACAAACTTTAATACTATTAACACCCCCACCACCACTGATATTAACTACTCATTCTCACCCACTCAAGAATATTTCAACTTCGACTTCTCCTCCGGTAACTCATGGTCGCAAAACATTCTCCTTGAAACCGCACGTGCCATTTCCGACAACGACACAAACCGAATCCAACAACTCATGTGGATGCTCAACGAGCTTAGTTCACCTTACGGCGATACAGATCAAAAACTCTCAGCATATTTCCTCCAAGCTTTGTTCAGCCGCATGAACGATGCAGGTGACAGAACCTACAAAACCTTAACATTCGCGACGGAGAAAACATGTTCCTTCGACTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCGTCCAATGGTGCTATCTTGGAAGCATTAGAAGGTAACCCTAAACTTCACATAATTGATATCAGCAACACGTATTGCACTCAATGGCCAACGCTTCTCGAAGCGTTGGCCACTCGCTCCGACGATACACCGCACCTCCGTTTAACCACGGTAGTCACAGCCGTCAGTGGTGGCTCCGTTCAGAAAGTCATGAAGGAAATAGGAGCCAGGATGGAGAAATTCGCGAGGCTTATGGGAGTTCCATTTAAGTTCAAAATCATTTTCAGTGATTTAAGGGAGTTGAATTTAAGAGAGTTGGATATTAAAGAGGATGAAGCTTTGGCTATAAATTGTGTTAACTCTTTGCATTCAATTTCCGGCGCCGGGAACCACCGTGATAGTTTGATTAATTTTCTTCGTGGATTAGAGCCTAGGGTTATGACGGTGGTGGAAGAGGAAGCTGATTTAGAACATTGTTTTGGCTCAGATTTTGTGGAAGGTTTTGGAGAGAGTTTGAGATGGTTTAGGGTTTATTTTGAAGCACTTGAAGAGAGTTTTTCGAGAACCAGTTGTGAGAGATTGATGCTTGAAAGAGAAGCTGGTAGAGGTATTGTTGATTTGGTTGCTTGTGATGCTTTTGAATCAGTGGAGAGACGCGAAACGGCGTCGCGGTGGAGGAGGCGTTTGCAACGTGGAGGGTTTACTACGGCGGCGTTTAGCGATGAGGTTTGTGATGATGTGAGAGCGTTGTTGAGGAGGTATAGAGAAGGGTGGTCGTTGACACCGTGCTCCGCCGCTGATGACGGAATATTTTTGTCGTGGAAGGATAAGCCGGTTGTGTGGGCCAGTGTATGGAGGCCTTGA 1590 0.4352 MDTLFRLVNFQQQQQHHQYQPDPSLNSTTTLTTSSSSRSSRQTTTTTTNYHYYQHQEEDEECFNNFYYMDHNNTNDEDLSSSSSKQHYYNYPYDQQQTHPHHHHVSTTTITTSSPNTNTNFNTINTPTTTDINYSFSPTQEYFNFDFSSGNSWSQNILLETARAISDNDTNRIQQLMWMLNELSSPYGDTDQKLSAYFLQALFSRMNDAGDRTYKTLTFATEKTCSFDSTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAVSGGSVQKVMKEIGARMEKFARLMGVPFKFKIIFSDLRELNLRELDIKEDEALAINCVNSLHSISGAGNHRDSLINFLRGLEPRVMTVVEEEADLEHCFGSDFVEGFGESLRWFRVYFEALEESFSRTSCERLMLEREAGRGIVDLVACDAFESVERRETASRWRRRLQRGGFTTAAFSDEVCDDVRALLRRYREGWSLTPCSAADDGIFLSWKDKPVVWASVWRP 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02728 529 ProSiteProfiles GRAS family profile. 145 528 IPR005202 -
Vivi1g02728 529 MobiDBLite consensus disorder prediction 12 48 - -
Vivi1g02728 529 MobiDBLite consensus disorder prediction 95 119 - -
Vivi1g02728 529 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 521 IPR005202 -
Vivi1g02728 529 Pfam GRAS domain family 156 528 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02728 Vivi-Chr1 58577566 58579568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02728 1 529 GRAS Transcription Factor Family AT4G37650 55.898 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi1g02728 GRAS 2.6e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02728 - - vvo:131607159 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02728 1 58577566 58579568 Vivi1g02728 1 58577566 58579568 ECH
Vivi2g03479 2 141763399 141765468 Vivi1g02728 1 58577566 58579568 PCT