Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02722 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTAAAAGCTGGAGTACACAAACATGGGTCAGGAAAATGGCGCACTATACTTACTGATCCTGATTTTGGTGCCATTTTGCGTACTCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAGTGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTTCCAGCCCCCAAAATTGACAATAATCAACCGGCCTTGAGTAAAGTAGTTCAACGTGAAGACTTTCTTGATATTAAGCCTCTAACAATATCTAGTGGAGCATTGCAATCTTCTAATTTAAAAGAACAAGTATCAAGAAGTAATACGTTTCTCAATGATGGCAATTTGGGGGATAATCATGTACTAGAGGCTATTGTCAATATGAAGGATCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAGCACAAGTACAAGATTATGCCAAGCCCAACAGTCTCTGAGAAAAGAAGAAGCTCTTCCTTGATGCTCATAGAAGCAAGGCCCAAAGATTCTCTAGAAGTGGAGAAGAGTGGTGATGTCAACATCCTTTCAAGATCTCAAATTGACGAAGAGCTATCAAAAGTGAGGAGCATGACAGCTCAAGAGGCGGCAGCTGCAGCTGCAAAAGCAGTTGCAGAGGCCGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCTAGAGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGAAGAAGGCACTTAAATGCAAAATGCTTCATATTTGA 831 0.4392 MGAPKQKWTAEEEAALKAGVHKHGSGKWRTILTDPDFGAILRTRSNVDLKDKWRNISVTAIWGSRQKAKLALKKNLPAPKIDNNQPALSKVVQREDFLDIKPLTISSGALQSSNLKEQVSRSNTFLNDGNLGDNHVLEAIVNMKDPKGSDKAAIASYIEEKHKYKIMPSPTVSEKRRSSSLMLIEARPKDSLEVEKSGDVNILSRSQIDEELSKVRSMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAKKALKCKMLHI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02722 276 PANTHER SINGLE MYB HISTONE 4 1 272 IPR044597 GO:0003691
Vivi1g02722 276 FunFam Telomere repeat-binding factor 1 2 58 - -
Vivi1g02722 276 Gene3D - 2 58 - -
Vivi1g02722 276 Pfam linker histone H1 and H5 family 136 165 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g02722 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vivi1g02722 276 SUPERFAMILY "Winged helix" DNA-binding domain 134 165 IPR036390 -
Vivi1g02722 276 SMART sant 4 59 IPR001005 -
Vivi1g02722 276 Coils Coil 224 261 - -
Vivi1g02722 276 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Vivi1g02722 276 CDD SANT_TRF 6 56 - -
Vivi1g02722 276 Gene3D - 133 181 IPR036388 -
Vivi1g02722 276 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vivi1g02722 276 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02722 Vivi-Chr1 58537260 58545201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02722 1 273 Single Myb Histone (SMH) Gene Family AT5G67580 48.845 1.18e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g02722 Myb_DNA-binding 4.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02722 K09422 - gmx:100779583 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03492 2 141947671 141952581 Vivi1g02722 1 58537260 58545201 PCT