Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02721 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTAAAAGCTGGAGTACACAAACATGGGTCAGGAAAATGGCGCACTATACTTACTGATCCTGATTTTGGTGCCATTTTGCGTACTCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAGTGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTTCCAGCCCCCAAAATTGACAATAATCAACCGGCCTTGAGTAAAGTAGTTCAACGTGAAGACTTTCTTGATATTAAGCCTCTAACAATATCTAGTGGAGCATTGCAATCTTCTAATTTAAAAGAACAAGTATCAAGAAGTAATACGTTTCTCAATGATGGCAATTTGGGGGATAATCATGTACTAGAGGCTATTGTCAATATGAAGGATCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAGATCTTAAAATGTTATTGTCAACAAAACTGCAGCATATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAGATTATGCCAAGCCCAACAGTCTCTGAGAAAAGAAGAAGCTCTTCCTTGATGCTCATAGAAGCAAGGCCCAAAGATTCTCTAGAAGTGGAGAAGAGTGGTGATGTCAACATCCTTTCAAGATCTCAAATTGACGAAGAGCTATCAAAAGTGAGGAGCATGACAGCTCAAGAGGCGGCAGCTGCAGCTGCAAAAGCAGTTGCAGAGGCCGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCTAGAGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGAAGAAGGCACTTAAATGCAAAATGCTTCATATTTGA 915 0.4328 MGAPKQKWTAEEEAALKAGVHKHGSGKWRTILTDPDFGAILRTRSNVDLKDKWRNISVTAIWGSRQKAKLALKKNLPAPKIDNNQPALSKVVQREDFLDIKPLTISSGALQSSNLKEQVSRSNTFLNDGNLGDNHVLEAIVNMKDPKGSDKAAIASYIEEKYQCPPDLKMLLSTKLQHMVTSGKIVQEKHKYKIMPSPTVSEKRRSSSLMLIEARPKDSLEVEKSGDVNILSRSQIDEELSKVRSMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAKKALKCKMLHI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02721 304 SUPERFAMILY "Winged helix" DNA-binding domain 134 205 IPR036390 -
Vivi1g02721 304 FunFam Telomere repeat-binding factor 1 2 58 - -
Vivi1g02721 304 SMART h15plus2 132 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g02721 304 PANTHER SINGLE MYB HISTONE 4 1 300 IPR044597 GO:0003691
Vivi1g02721 304 Pfam linker histone H1 and H5 family 136 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g02721 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vivi1g02721 304 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Vivi1g02721 304 SMART sant 4 59 IPR001005 -
Vivi1g02721 304 Coils Coil 252 289 - -
Vivi1g02721 304 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 127 196 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi1g02721 304 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Vivi1g02721 304 Gene3D - 2 58 - -
Vivi1g02721 304 Gene3D - 133 207 IPR036388 -
Vivi1g02721 304 CDD SANT_TRF 6 56 - -
Vivi1g02721 304 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02721 Vivi-Chr1 58537260 58545201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02721 1 301 Single Myb Histone (SMH) Gene Family AT5G67580 51.155 3.05e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi1g02721 Linker_histone 7.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02721 K09422 - gmx:100779583 367.466