Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02699 ATGGGAAGAGCACCTTGCTGTGACAAAGCCAATGTTAAAAAAGGTCCATGGTCGCCAGAAGAAGACTCTAAACTCAAAGCTTATATCCAACAACATGGCACTGCTGGCAATTGGATAGCTCTTCCCAAGAAAATAGGCCTCAAAAGATGTGGAAAAAGTTGTCGTCTTCGATGGCTAAATTATCTTCGTCCAAATCTTAGACATGGAAGATTCTCAGAAGAAGAAGATAACATTATTTGCAGCCTCTATGTCAATATTGGAAGCAGGTGGTCAGTTATAGCAGCGCAGTTACCAGGACGAACAGATAATGATATAAAAAACCATTGGAACACAAGGTTGAAGAAGAAACTTTTAACAAATCAAAGGAATGAGCAACAATCTCAAATCAAGAGAGAAAATACTTGTTCTATCCAAGACTATAATAATAAGCTTAAGGAAGTTGAGTTGTATGGTAATCATCATCAACTGCAGGCAGTGAATAGTAACATATACTTCCCAGAAGATCAACTATATTATCCATCCACAATGAATAACATAACCTGTGCAGGGTTGTCCTATGTGAACCAGCAAGAAAAAGATAATGGATCAGCGAACTTGAATTCAACAGAAAGCACTAGTTGGGGGGATATGAGGTCTTTGATTAACTCACCTTTGGTTTCTGATTATGAAGGTTGTCAACAAGATGTTGTTAGTTTCGATGAGTCTATGTTCTATGGAATGATTCAAACGCAATAA 735 0.3769 MGRAPCCDKANVKKGPWSPEEDSKLKAYIQQHGTAGNWIALPKKIGLKRCGKSCRLRWLNYLRPNLRHGRFSEEEDNIICSLYVNIGSRWSVIAAQLPGRTDNDIKNHWNTRLKKKLLTNQRNEQQSQIKRENTCSIQDYNNKLKEVELYGNHHQLQAVNSNIYFPEDQLYYPSTMNNITCAGLSYVNQQEKDNGSANLNSTESTSWGDMRSLINSPLVSDYEGCQQDVVSFDESMFYGMIQTQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02699 244 SMART sant 13 64 IPR001005 -
Vivi1g02699 244 SMART sant 67 115 IPR001005 -
Vivi1g02699 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi1g02699 244 Gene3D - 7 68 - -
Vivi1g02699 244 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi1g02699 244 Gene3D - 70 145 - -
Vivi1g02699 244 CDD SANT 16 62 IPR001005 -
Vivi1g02699 244 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi1g02699 244 CDD SANT 70 113 IPR001005 -
Vivi1g02699 244 PANTHER OS09G0431300 PROTEIN 1 195 - -
Vivi1g02699 244 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi1g02699 244 FunFam Transcription factor RAX3 7 68 - -
Vivi1g02699 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vivi1g02699 244 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi1g02699 244 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02699 Vivi-Chr1 57731183 57732344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02699 1 132 MYB Transcription Factor Family AT5G65790 81.955 2.76e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g02699 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02699 K09422 - gmx:106795158 290.812