Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02688 ATGGGTCTTAATAATCAAGATGCTGGAAATAACAACTCAAACCTTCAACTTATTCTAGGCTTAGCTCTTACTCTCACCAAACAAGACACACCACCATCCAACAACAACCTTACAAAACCTTATTCATCAAGCAACAACAACTATGAAGCTGAACCATCTCTAACGTTGGGTTTATCTAGTTACTACGAAGAACATGTTGATTTTTCTGCACAAACAAACTCACCTCTCCATAGCGTTGTTTCGTCTTTCTCTAGTGGGAGAGTGAAAAGAGAAAGAGATGTTAGCAGTGAAGAAATCGAAGTAACGGAGATAGAAAGAGTTTCTTCGAGAATTAGCGATGAAGAAGAAGACGGTGCCACCGCAACTAGGAAGAAACTTAGACTTACCAAAGATCAATCTGCCATGCTTGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCCTTAGCCCGAGAGTTAAATCTAACAGCTCGACAAGTTGAGGTCTGGTTTCAGAACCGCAGAGCCAGAACAAAGCTGAAGCAAACTGAGGTGGATTGTGAATTCTTGAAGAAATGTTGTGAAACATTAACAGATGAAAACAGAAGGTTACAAAAAGAGGTTCAAGAATTAAAGGCACTGAAGCAAGCACAACCTTTATATATGCCTATGCCTGCTGCAACTCTTACTATGTGCCCTTCATGTGAGAGGCTTGGTGGTGGTGTTAATGGTGGTGCTTCCAATAAGAGCAATTTTTCAATGGCTCCTAAACCTCACTTTTACAATCCTTTCACAAATTCTTCTGCAGCATGTTGA 810 0.4037 MGLNNQDAGNNNSNLQLILGLALTLTKQDTPPSNNNLTKPYSSSNNNYEAEPSLTLGLSSYYEEHVDFSAQTNSPLHSVVSSFSSGRVKRERDVSSEEIEVTEIERVSSRISDEEEDGATATRKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKQAQPLYMPMPAATLTMCPSCERLGGGVNGGASNKSNFSMAPKPHFYNPFTNSSAAC 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02688 269 FunFam Homeobox-leucine zipper protein 18 108 184 - -
Vivi1g02688 269 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Vivi1g02688 269 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 249 - -
Vivi1g02688 269 Pfam Homeobox associated leucine zipper 179 214 IPR003106 GO:0006355|GO:0043565
Vivi1g02688 269 SUPERFAMILY Homeodomain-like 117 180 IPR009057 -
Vivi1g02688 269 SMART halz 179 222 IPR003106 GO:0006355|GO:0043565
Vivi1g02688 269 MobiDBLite consensus disorder prediction 28 48 - -
Vivi1g02688 269 SMART HOX_1 121 183 IPR001356 GO:0003677
Vivi1g02688 269 Pfam Homeodomain 123 177 IPR001356 GO:0003677
Vivi1g02688 269 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Vivi1g02688 269 Coils Coil 185 215 - -
Vivi1g02688 269 Gene3D - 116 184 - -
Vivi1g02688 269 CDD homeodomain 123 180 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02688 Vivi-Chr1 57451655 57453140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02688 1 269 Homeobox Transcription Factor Family AT4G37790 58.966 2.17e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g02688 Homeodomain 5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02688 K09338 - gmx:100795135 338.961