Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02686 ATGCACCCGCCAATGAGAATAGTCAACTACAACGTTGGAGATAAAGTGGAAGTATGCAGTAAAGAAGGAGGCTTTGTTGGTTCTTACTTTAAAGCTACAATTGTTTCATGCCTTCCAAATGAAAAATATGTAGTTTGTTACGAGAATCTCCTTTTAGATGATAAGTCTGGACCTCTCATAGAAATAATTCATCAAAGAGAGATTCGTCCTTTGCCCGCACATGTTCGCAATCCTCCTGAGCTCCACTTAAACCAAAAAGTAGATGTTTTTGATAACGATGGTTGGTGGTTGGGAGAAACCACTAGTGAGAAGATTCTATTTGAAAATTATTATTACAAAGTGTATTTCACTACTACCGGTGAGACACTTTACTATTCTCGTAATCAAATTCGGGTTCATCATGAATGGATTGATGGAGAATGCGTGTTAGAAACATAA 438 0.3721 MHPPMRIVNYNVGDKVEVCSKEGGFVGSYFKATIVSCLPNEKYVVCYENLLLDDKSGPLIEIIHQREIRPLPAHVRNPPELHLNQKVDVFDNDGWWLGETTSEKILFENYYYKVYFTTTGETLYYSRNQIRVHHEWIDGECVLET 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02686 145 Gene3D - 2 77 - -
Vivi1g02686 145 Pfam Agenet domain 13 72 IPR008395 -
Vivi1g02686 145 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 141 - -
Vivi1g02686 145 CDD Tudor_Agenet_AtDUF_rpt1_3 12 72 - -
Vivi1g02686 145 SMART agenet_At_2 8 76 IPR014002 -
Vivi1g02686 145 SMART agenet_At_2 79 138 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02686 Vivi-Chr1 57408492 57408929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02686 20 136 PHD Transcription Factor Family AT5G58610 28.169 7.83e-09 51.2