Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02685 ATGTCTGAAGAAGGTCACCAACCTCATCACCACAGTGGAAAAGACTATGTTGACCCTCCACCAGCACCTCTTCTCGACTTCGCCGAAATCAAGCTCTGGTCCTTTTACAGAGCTCTCATCGCTGAGTTCATAGCCACACTCCTTTTCCTCTACGTCACCGTCGCCACCGTCATTGGCCACAAGAAACAAACCGGACCATGTGACGGTGTTGGCCTTCTCGGCATAGCATGGTCATTTGGTGGCATGATATTCGTCCTTGTCTACTGCACCGCCGGTATCTCCGGTGGCCACATCAACCCTGCCGTCACACTCGGCCTCTTCTTAGCACGTAAGGTTTCTCTTATTCGAGCTGTTTTATACATTATATCACAGTGTTTAGGTGCTATATGCGGTGTTGGGTTGGTGAAGACTTTCATGAAGCATCCTTACAACAGCCTTGGTGGTGGTGCAAACTCGGTGGCTTTTGGTTATACAAAAGGTTCAGCACTTGGTGCTGAGATTATCGGAACTTTTGTGCTGGTTTACACTGTTTTCACTGCTACTGACCCTAAGAGAAAAACACGTGACTCATATATTCCTGTTTTGGCTCCTTTGCCTATTGGTTTTGCTGTTTTCATGGTTCATCTTGCGACTATTCCGATCACCGGTACTGGAATTAACCCTGCTAGAAGCTTTGGTACTGCTGTTATCTTCAACAATGGCAAAGTTTGGGATGACCAATGGATTTTCTGGGTTGGACCATTCGTGGGAGCAGCGGCTGCGGCGGTGTACCATCTGTGTATTCTGAGAGCGGCGGTTATCAAGGCGTTGGGCTAA 816 0.4816 MSEEGHQPHHHSGKDYVDPPPAPLLDFAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKVSLIRAVLYIISQCLGAICGVGLVKTFMKHPYNSLGGGANSVAFGYTKGSALGAEIIGTFVLVYTVFTATDPKRKTRDSYIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGTAVIFNNGKVWDDQWIFWVGPFVGAAAAAVYHLCILRAAVIKALG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02685 271 NCBIfam MIP family channel protein 41 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 SUPERFAMILY Aquaporin-like 29 262 IPR023271 -
Vivi1g02685 271 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Vivi1g02685 271 Pfam Major intrinsic protein 30 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g02685 271 FunFam Probable aquaporin PIP1-2 22 271 - -
Vivi1g02685 271 Gene3D Glycerol uptake facilitator protein. 22 270 IPR023271 -
Vivi1g02685 271 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 265 IPR034294 -
Vivi1g02685 271 CDD MIP 37 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02685 Vivi-Chr1 57386287 57387300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02685 1 271 Major Intrinsic Protein MIP AT4G35100 84.871 6.74e-169 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02685 K09872 - qsa:O6P43_011443 462.611