Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02683 ATGGGTCTTAATAACCAAGATGCTGGAAATAACAACTCAAACCTTCAACTTATTCTAGGCTTAGCTCTTACTCTCACCAAACAAGACACCCCACCCTCCAACAACCTTACAAAACCTTATTCATCAAGCAACAACAACTATGAAGCTGAACCATCTCTAACGTTGGGTTTATCTAGTTACTACGAAGAACATGTTGATTTTTCTGCACAAACAAACTCACCTCTCCATAGCGTTGTTTCGTCTTTCTCCAGTGGGAGAGTGAAAAGAGAAAGAGATGTTAGCAGTGAAGAAATCGAAGTAACGGAGATAGAAAGAGTTTCTTCGAGAATTAGCGATGAAGAAGAAGACGGTGCCACCGCAACTAGGAAGAAACTTAGACTCACCAAAGATCAATCTGCCATGCTTGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCCTTAGCCCGAGAGTTAAATCTAACAGCTCGACAAGTTGAAGTCTGGTTTCAGAACCGCAGAGCCAGAACAAAGCTGAAGCAAACTGAGGTGGATTGTGAATTCTTGAAAAAATGTTGTGAAACATTAACAGATGAAAACAGAAGGTTACAAAAAGAGGTTCAAGAATTAAAGGCACTGAAGCAAGCACAACCTTTGTATATGCCTATGCCTGCTGCAACTCTTACTATGTGCCCTTCTTGTGAGAGGCTTGGTGGTGGTGTTAATGGTGGTGCTTCCAATAAGAGCAATTTTTCAATGGCTCCTAAACCTCACTTTTATAATCCCTTCACAAATTCTTCTGCAGCATGTTGA 807 0.4089 MGLNNQDAGNNNSNLQLILGLALTLTKQDTPPSNNLTKPYSSSNNNYEAEPSLTLGLSSYYEEHVDFSAQTNSPLHSVVSSFSSGRVKRERDVSSEEIEVTEIERVSSRISDEEEDGATATRKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKQAQPLYMPMPAATLTMCPSCERLGGGVNGGASNKSNFSMAPKPHFYNPFTNSSAAC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02683 268 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Vivi1g02683 268 Gene3D - 115 183 - -
Vivi1g02683 268 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Vivi1g02683 268 CDD homeodomain 122 179 IPR001356 GO:0003677
Vivi1g02683 268 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Vivi1g02683 268 SUPERFAMILY Homeodomain-like 116 179 IPR009057 -
Vivi1g02683 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 248 - -
Vivi1g02683 268 FunFam Homeobox-leucine zipper protein 18 107 183 - -
Vivi1g02683 268 Pfam Homeobox associated leucine zipper 178 213 IPR003106 GO:0006355|GO:0043565
Vivi1g02683 268 Coils Coil 184 214 - -
Vivi1g02683 268 MobiDBLite consensus disorder prediction 27 46 - -
Vivi1g02683 268 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Vivi1g02683 268 SMART HOX_1 120 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02683 Vivi-Chr1 57252121 57253524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02683 1 268 Homeobox Transcription Factor Family AT4G37790 58.824 2.38e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g02683 Homeodomain 5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02683 K09338 - gmx:100795135 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03539 2 143190001 143191566 Vivi1g02683 1 57252121 57253524 PCT