Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02666 ATGATTCAAATTTCGTCGTCCAACTACATACCTGAATTTGGAATAGATGACACTAGTTTGTTTCAAGCAATGGATTCATTTGCATTCGACTTTGATGATATTCCATATTTCAACTCTTTCTCATCATCTACACCTGAGAGTACTAATTCCTCTCATAACATTAATAATCACAAGAAGCGATTCTATTCCGAAAGCACGCAAAACAGCTCTTTCCCAGTGGAAAGTCCTGATCAATCTGTTGTCTCTGCAACACCACCAACAAAGGCTTCTCCATCTTCCAAAATCATTTCTTTTGATAATATGCATACAAAGGCTAAGAAGCCTAAAACCGAGTCTGGATATGGTGAAAACTTGAATTTTGGAGGTGACTATGATAAACAAGAGAGCAAGGTTGCAACAACAATAACAAACAGAAACCCGATCCAAGCACGAGATCATGTAATAGCTGAACGAAAACGAAGGCAAAAGCTTAACCAGAAATTAATTACCCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTCTAGAAGATGCTATAAGTCATCTAAAGCAATTAAAAGAACGAGTCCAGTCTTTAGAGGAACAAGTAGCTGATAGAAAAGTCGAATCCGCAGTTTTTGTTAAGAGATCTATTCTCTTCTCCGATGATGATTGCGATGAAAACTCAGACCAATCACTCCCGAAAATAGAAGCTAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACTGTCACAAACACACCGGCCGAATTCCTACCGCAATACTCAACAAACTCGAAAAACATCATCTCACCATTCAGAGTAGTTCTTTTTTACCATTTGGAAGTAACTATGTTGACATAACCATTGTTGCTCAGATGAATAAAGAATATTGCTTGACGATAAAAGATCTCATAAGAAGCATAAATCAGGTTTTGATGCAGCTCATTTGA 948 0.3766 MIQISSSNYIPEFGIDDTSLFQAMDSFAFDFDDIPYFNSFSSSTPESTNSSHNINNHKKRFYSESTQNSSFPVESPDQSVVSATPPTKASPSSKIISFDNMHTKAKKPKTESGYGENLNFGGDYDKQESKVATTITNRNPIQARDHVIAERKRRQKLNQKLITLSSILPGLKKMDKATILEDAISHLKQLKERVQSLEEQVADRKVESAVFVKRSILFSDDDCDENSDQSLPKIEARVSGKDMLIRIHCHKHTGRIPTAILNKLEKHHLTIQSSSFLPFGSNYVDITIVAQMNKEYCLTIKDLIRSINQVLMQLI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02666 315 MobiDBLite consensus disorder prediction 62 96 - -
Vivi1g02666 315 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
Vivi1g02666 315 SMART finulus 147 196 IPR011598 GO:0046983
Vivi1g02666 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Vivi1g02666 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 209 IPR036638 GO:0046983
Vivi1g02666 315 Coils Coil 180 207 - -
Vivi1g02666 315 PANTHER BHLH TRANSCRIPTION FACTOR 37 313 - -
Vivi1g02666 315 Gene3D - 137 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02666 Vivi-Chr1 56610150 56612019 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02666 123 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.284 1.63e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02666 HLH 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02666 - - tpra:123921001 407.142