Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02664 ATGATTCAAATTTCGTCTTCCAAGTACATGCCTGAATTTGGAATGGAAGACACTCGTTTGTTTGAAGCAATGGATTCATTTGCATTTGACTTTGATGATATTCCATATTTCAACTCTTTCTCAGCTTCCACACCTGAGAGTACTAATTCTTCTCATAATAATAAGAGATTCCATTCCGAAAGCACACAAAACAACTCTTTCCCCAATGAAAGTCCTAATCAATCTGTTGCCTCTGCAACACCGCCAACAAAGCTACAACTCAAGGCTTCTTCATCTTCCAAGATCATTTCTTTTGATAATAAGGAGGTTAAGAAGCCTAAAACTGAGTTGGAGTACGGTGAAAACTTGAATTTTGGAAGTGAGTATGATAAACGAGACAACAAGGTTGTGACAACGATAACGAACAGAAACCCGATCCAAGCACGAGATCATGTATTAGCTGAAAGAAAACGAAGGCAAAAGCTTAACCAGAAATTAATTACTCTTTCCTCTATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAATCATCTAAATCAATTAAAAGAACGAGTCAAGAGTTTAGAAGAACAAGTAGCTGATAGAAAAGTTGAATCTGCAGTTTATTTGAAGAGATCTATCCTCTTCTCCGATGATGATTGTGACGAATACTCAGACCAATCAGTCCCGAAAATAGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACTGTCACAAACACACCGGCCGAATTCCGACCGCAATACTTAACAAACTCGAAAAACTTGATCTCACAATTCAGAGTAGTTCCGTTTTACAATTTGGAAGTAACTATATTGACATAACCATTGTTGCTCAGATGAATAAAGAATATTGCTTGACAATAAAAGATCTCATAAGAAGCATAAGTCAGGTTTTGAAACAGCTCGTTTGA 942 0.3694 MIQISSSKYMPEFGMEDTRLFEAMDSFAFDFDDIPYFNSFSASTPESTNSSHNNKRFHSESTQNNSFPNESPNQSVASATPPTKLQLKASSSSKIISFDNKEVKKPKTELEYGENLNFGSEYDKRDNKVVTTITNRNPIQARDHVLAERKRRQKLNQKLITLSSILPGLKKMDKATILEDAINHLNQLKERVKSLEEQVADRKVESAVYLKRSILFSDDDCDEYSDQSVPKIEARVSGKDMLIRIHCHKHTGRIPTAILNKLEKLDLTIQSSSVLQFGSNYIDITIVAQMNKEYCLTIKDLIRSISQVLKQLV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02664 313 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983
Vivi1g02664 313 Gene3D - 135 201 IPR036638 GO:0046983
Vivi1g02664 313 PANTHER BHLH TRANSCRIPTION FACTOR 37 309 - -
Vivi1g02664 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 208 IPR036638 GO:0046983
Vivi1g02664 313 SMART finulus 145 194 IPR011598 GO:0046983
Vivi1g02664 313 Coils Coil 178 205 - -
Vivi1g02664 313 MobiDBLite consensus disorder prediction 43 88 - -
Vivi1g02664 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02664 Vivi-Chr1 56601249 56602986 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02664 75 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.742 9.58e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02664 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02664 - - tpra:123921001 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02664 1 56601249 56602986 Vivi1g02664 1 56601249 56602986 ECH
Vivi2g03552 2 143513618 143515620 Vivi1g02664 1 56601249 56602986 PCT