Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02663 ATGGATAAGAAGACTAAGAAGCCTAAAACCGAGTCTGGCTATGGTGAAAACTTGAATTTTGGAAGTGAGTATGATAAACGAGAGAACAAGGTTGCGACAACGATAACCAACAGAAACCCGATCCAAGCGAGAGATCATGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTTAACCAGAAATTAATTACTCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATTCTAGAAGATGCTATAAGTCATCTAAAGCAATTAAAACAACGAGTCAAGAGTTTAGAGGAACAAGTAGCTGATAGAAAAGTTGAATCTGCAGTTTATGTGAAGAGATCTATCCTCTTCTCCGATGATGATTGTGACGAATACTCAGACCAATCAGTCCCAAAAATAGAAGCAAGAGTTTCTTGA 420 0.381 MDKKTKKPKTESGYGENLNFGSEYDKRENKVATTITNRNPIQARDHVIAERKRREKLNQKLITLSSILPGLKKMDKATILEDAISHLKQLKQRVKSLEEQVADRKVESAVYVKRSILFSDDDCDEYSDQSVPKIEARVS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02663 139 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g02663 139 Gene3D - 37 103 IPR036638 GO:0046983
Vivi1g02663 139 Pfam Helix-loop-helix DNA-binding domain 45 91 IPR011598 GO:0046983
Vivi1g02663 139 Coils Coil 80 107 - -
Vivi1g02663 139 PANTHER BHLH TRANSCRIPTION FACTOR 17 139 - -
Vivi1g02663 139 SMART finulus 47 96 IPR011598 GO:0046983
Vivi1g02663 139 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Vivi1g02663 139 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 110 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02663 Vivi-Chr1 56586077 56587109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02663 23 139 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.800 9.24e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02663 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02663 - - vvo:131606818 272.322