Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02662 ATGACTTCAATGGAGGAATCATGGACTAATTGGTTATGTGAAATGGATCCATATGATTACAGTTTCATCAACCAATCAAGCATAAATGCAGACATTGTTAGTAGTTTTGAGAGAAACTTTGAGAGGCCTTCAAAGTTAGTCAAAACAGATTCTTCATCAACTTGCTCATACAATATTTCTTTTAAAAATGAAAATCCACAACCAATAAGAGTTGAACCAGCTTTTAAGCCAAGGTCCAAAACTACGAACTCAAAGAATGAACGAAAACGTGTTAATACTCAAGAGAGCAACAAGAAGAACGGTTCAGTTTCCAAATCTGCATCTCATCACATACCAGATCATATTATTGCTGAGAGAATAAGAAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCGCTTATTCCAAATCTAAAAAAGATAGACAAAACTTCTGTGCTATGTGATGCTATTAAGTATGTGAAAGAACTTAAGGAGCAAGTGAAACTGTTGGAGGAACAAAGCAAAAAGAACAGTCTAGAATCAATGGTGGATGAAGAATTTTCGTTCACTTCGTCGTGTAATGAAACCTCAAAAACAAATATGTCACTGCCAGAAGTTAAAGCTAGGTTGTCGGGTAAGAATGTGGTGATTCGAATCCTCTGTGAGAAAAATAAGGCAGTGATGGTGAATGTGTATAGAGAGATAGAGAAACTTCATCTCTCAGTTATTGGTGGGAGTTCATTGTCCTTTGGTTCGTTTCTTCTTGCCATAACCATCATCGCCAAGATGGACGATGAATGGAACATGAGCATGGAGAAACTGGCGAAAACCCTGGGAGTTGGACTGTTGTAA 837 0.374 MTSMEESWTNWLCEMDPYDYSFINQSSINADIVSSFERNFERPSKLVKTDSSSTCSYNISFKNENPQPIRVEPAFKPRSKTTNSKNERKRVNTQESNKKNGSVSKSASHHIPDHIIAERIRREKISQQFIALSALIPNLKKIDKTSVLCDAIKYVKELKEQVKLLEEQSKKNSLESMVDEEFSFTSSCNETSKTNMSLPEVKARLSGKNVVIRILCEKNKAVMVNVYREIEKLHLSVIGGSSLSFGSFLLAITIIAKMDDEWNMSMEKLAKTLGVGLL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02662 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 172 IPR036638 GO:0046983
Vivi1g02662 278 Coils Coil 155 175 - -
Vivi1g02662 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Vivi1g02662 278 MobiDBLite consensus disorder prediction 81 95 - -
Vivi1g02662 278 SMART finulus 115 164 IPR011598 GO:0046983
Vivi1g02662 278 Pfam Helix-loop-helix DNA-binding domain 114 158 IPR011598 GO:0046983
Vivi1g02662 278 PANTHER BHLH TRANSCRIPTION FACTOR 38 275 - -
Vivi1g02662 278 MobiDBLite consensus disorder prediction 68 110 - -
Vivi1g02662 278 Gene3D - 112 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02662 Vivi-Chr1 56573982 56578272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02662 68 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.364 8.88e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02662 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02662 - - vvo:131606808 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02662 1 56573982 56578272 Vivi1g02662 1 56573982 56578272 ECH
Vivi2g03554 2 143554128 143556260 Vivi1g02662 1 56573982 56578272 PCT