Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02661 ATGATGGAGGAAATCAACAGCACACCAATGAAGGAATCATCAACCAGCAAATGGCTATCTGATTTGGAAATGGATGAGTATAATTTATTTCCAGAGGAATGCAACTTGAATTTCCTTGATGCTGATGAGAAACAAGAGTTTGTTTCACATGACATAGCTACTGTCTTTCAAGAACAAAACCAACAACAATGTTTGAATTCAGAGTCCACTCTCAGTCTCAACAACTCATTCACTGATGAAACATGTTTGGACTCTTTTGACTTTCATTTTGACAAACCAACGTTTTCACCAAAACAATCTTCTTCCTCATCTAACTCATCTTTTCAGACTCTGATTCTCTCTTTTGACAACCAAACCTCACCTGCTACCAGCACCCCCCAATTTTATGAACTTAACCATACTCTAACCTCGAAACAGAAAGAAATAATGTCAGTATCTCCACCCCAGTTGGAAAATACTCATCTCTTCACTCAAACTCCAAAAGGGTCATCAAAAAATCAAAATTTGGAAACAAAAACCTCACAACCAAAGAGATCTCGGGCTAACGCGGAGGATCATATCATGGCTGAGAGAAAGCGAAGAGAGATACTCAGTCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTAAAAAAGATGGACAAAGCTTCTGTATTAGCTGAATCCATTAAATACGTGAAAGAGCTTAAAGAGCGTTTGGAAGTTTTGGAAGAACGGAACAAGAAAACAAAAGAAGAATCCGCGGTTGTTCTGAACAAACCAGACATATGTAGCGATGAAGATAACTCCTCATGTGATGAGAACATTGAAGATGCTGGTGGGGGTGACAATGAATCACTGTTACAAGTGGAAGCAAGAGAGTTAGGGAAAGAGATGTTAATTAGGATCCACTGCAAGAAGAAAAAGGGTGTTTTGGTAAAAGTGATGGAAGAGATTCAAAGCTTAGAATTATTTGTTGTGAATAACAGTGTGTTACCCCTTGGGGATTCTGTCCTTGACATTACAATCATAGCTCAGATGGGTGAAGGATACAGCTTGAGCATAAAGGAACTTGTGAAGAAGCTACGCATGAAAGCGTTAAGTTTATATCATCATAATAACGTGTTTTGA 1113 0.3863 MMEEINSTPMKESSTSKWLSDLEMDEYNLFPEECNLNFLDADEKQEFVSHDIATVFQEQNQQQCLNSESTLSLNNSFTDETCLDSFDFHFDKPTFSPKQSSSSSNSSFQTLILSFDNQTSPATSTPQFYELNHTLTSKQKEIMSVSPPQLENTHLFTQTPKGSSKNQNLETKTSQPKRSRANAEDHIMAERKRREILSQSFIALAALVPNLKKMDKASVLAESIKYVKELKERLEVLEERNKKTKEESAVVLNKPDICSDEDNSSCDENIEDAGGGDNESLLQVEARELGKEMLIRIHCKKKKGVLVKVMEEIQSLELFVVNNSVLPLGDSVLDITIIAQMGEGYSLSIKELVKKLRMKALSLYHHNNVF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02661 370 Gene3D - 167 248 IPR036638 GO:0046983
Vivi1g02661 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Vivi1g02661 370 MobiDBLite consensus disorder prediction 153 176 - -
Vivi1g02661 370 SMART finulus 187 236 IPR011598 GO:0046983
Vivi1g02661 370 Pfam Helix-loop-helix DNA-binding domain 185 230 IPR011598 GO:0046983
Vivi1g02661 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 248 IPR036638 GO:0046983
Vivi1g02661 370 Coils Coil 220 254 - -
Vivi1g02661 370 PANTHER BHLH TRANSCRIPTION FACTOR 56 360 - -
Vivi1g02661 370 MobiDBLite consensus disorder prediction 153 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02661 Vivi-Chr1 56535687 56537543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02661 171 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.277 1.25e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02661 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02661 - - psat:127074316 538.495