Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02660 ATGGAAGAAATCAACAACACACCAATGAATGAGCCAGAAACCAACAAATGGCTATCTGATTTGGAAATGGATGAGTACAATTTATTTCCTGAAGAATGCAACCTGAATTTCCTTGATGCTGATGAGAAACAAGAGTTTGTTTCACATGACATAGCTACTGTCTTTCAAGAACAAAACCAACACCAACATGTGACTTCAGAGTGCACTTCCACAACCCTCACCAACTTACTCACTGATGAAACCAGTTTTGAGTCATTTGACTTTGGTTTTGAACTTACAATAATTGATCAAAATGACAACATCACTACTGAAACCATATCACCAAAACTATCTCCAACATCTTCTATCTCATCTTTTCAGTCTCAGATTCTCTCTTTTGAAAACCTCCCAAATTCACCTGCTACCAACACCCCCCAATTTTTTGAATTTGACCATACTCTAAACTCCAAACAGAATGAAACAGTGTCAGTATCTCCACCCCAGTTGGAAAACACTCATGTCTTCACTCAAACTCGAAAAGGGTCATCAAAAAATCAAAACTTGGAAGCAAAAACCTCGCAACCAAAGAGATCTCGAGCCAACGCTGAGGATCATATCATGGCTGAGAGAAAGCGAAGAGAGATACTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTATTCCTAACCTTAAAAAGATGGACAAAGCTTCTGTATTAGCCGAGTCTATTAAATACGTGAAAGAGCTTAAAGATCGTTTGGAAGTTTTGGAAGATCAGAACAAGAAAACTAAAGCTGAATCTGCGGTTGTTCTGAACAAACCAGACATATGTAGCGATGAAGATAACTCCTCAAGTGATGAGAGCATTGAATGTGGTGGTGGTGGTGACAGTGAATCACTCTTACAAGTGGAAGCAAGAGAGTTAGGGAAAGAGATGTTGATTAGGATCCACTGCAAGAAGAAGAAGGGAGTTTTGGTAAAAATGATGGGAGAGATTCAAAGTTTAGAATTGTTTGTAGTGAATAGCAATGTCTTACCCTTTGGTGATTCTGTCCTAGACATAACCATCATTGCTCAGATTGGTGAAGGGTACAATTTGAGCATAAAGGAGCTTGTGAAGAAGCTGCGCATGGATGCATTGAAGTTTATGTCATCATAA 1137 0.3914 MEEINNTPMNEPETNKWLSDLEMDEYNLFPEECNLNFLDADEKQEFVSHDIATVFQEQNQHQHVTSECTSTTLTNLLTDETSFESFDFGFELTIIDQNDNITTETISPKLSPTSSISSFQSQILSFENLPNSPATNTPQFFEFDHTLNSKQNETVSVSPPQLENTHVFTQTRKGSSKNQNLEAKTSQPKRSRANAEDHIMAERKRREILSQSFIALAALIPNLKKMDKASVLAESIKYVKELKDRLEVLEDQNKKTKAESAVVLNKPDICSDEDNSSSDESIECGGGGDSESLLQVEARELGKEMLIRIHCKKKKGVLVKMMGEIQSLELFVVNSNVLPFGDSVLDITIIAQIGEGYNLSIKELVKKLRMDALKFMSS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02660 378 PANTHER BHLH TRANSCRIPTION FACTOR 48 374 - -
Vivi1g02660 378 SMART finulus 199 248 IPR011598 GO:0046983
Vivi1g02660 378 MobiDBLite consensus disorder prediction 169 196 - -
Vivi1g02660 378 Gene3D - 180 259 IPR036638 GO:0046983
Vivi1g02660 378 MobiDBLite consensus disorder prediction 169 188 - -
Vivi1g02660 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 260 IPR036638 GO:0046983
Vivi1g02660 378 Coils Coil 232 266 - -
Vivi1g02660 378 MobiDBLite consensus disorder prediction 269 289 - -
Vivi1g02660 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Vivi1g02660 378 Pfam Helix-loop-helix DNA-binding domain 197 242 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02660 Vivi-Chr1 56482527 56484367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02660 156 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.326 1.12e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02660 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02660 - - psat:127074316 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02660 1 56482527 56484367 Vivi1g02660 1 56482527 56484367 ECH