Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02659 ATGGAGACACAAATGAACATATCAGCAGACAGTAGCTGGTTATCTGATTTGGAAATGGTTGATGAGGACTGCAACTTGAACTTGAACTTGAACTTGCTTGAAGGCAATGATGAAGAAGAGTTTCTATCACATGATATAGCTAGTGTCTTTGCCTTTGAGGAGCAGAGAGAGAATTTGCAACAATGTTTAAATACCGAATGCATTTCGACAACTCTGAGCGAAACATTTACGGAAGAAACAAGTTTTGAGTCTTTAGATAACTTTGATTTTGATTTTGAGAAACCAAATAAACAGATGAAAATATTGGATCAAAGTGAGAATGATAACATCACTGATAACTTTTCATTAAAAAGTGCAACATCACAGTCCTCTTATCAGTTGCCTCAGATCTTGTCTTTTGAAAATCCAAACCCAGCAGAGTTTTATGGGTATGATCAAAATCAGAAGGAAACAGTGACTTCGGAGTCATTGGGAAACAGAAATTTTCCATCTCAGAAGTCTAAAGGGTATTCAAAAGCATCACGAGATAGGAGGTCTCCAGCTCACAAAAAAGATCACATTATGGCAGAGAGAAAGAGAAGAGAGATGCTCAGCCAAAGCTTCATTGCTCTGGCTGCTCTCATTCCGGACTTAAAGAAGATGGACAAGGCTTCGATATTAGCAGAGACAATCAAATACGTCAAAGAGCTTCAGGAGCGTTTGAAGATTTTAGAACAGAAGGAAAAGAACCCAAAGGCAGATCAGTCGACGGTCACTCCGATCAAACCAAAGGTTAATAACGACGAGCATTACTCATCAACTGATGAGAGTACTGAAACTGAAAGTGCTGCTGATGGTTCTCCCACTGAATCTCTCTTCAAGGTGGAAGCAAAAGTTTCAGAGCAACACATGTTGATTCGGATCCACTGCCAAAAGCATAATGGTCTTCTTGTTAAAATCATCTCCAAGATTCAAAGTTTTGAATTATTTGTAGTCAATAACAGCGTTTTAGCCTTTGGAGATTCTATCCTCGACATTACCATCATTGCTGAGATTGGTGAAGGCTACAACTTGACTGTAAAGGAACTCGTCCACAACATACGTATGGCCGCATTGAAGTTTATGTCAACGTAA 1113 0.3908 METQMNISADSSWLSDLEMVDEDCNLNLNLNLLEGNDEEEFLSHDIASVFAFEEQRENLQQCLNTECISTTLSETFTEETSFESLDNFDFDFEKPNKQMKILDQSENDNITDNFSLKSATSQSSYQLPQILSFENPNPAEFYGYDQNQKETVTSESLGNRNFPSQKSKGYSKASRDRRSPAHKKDHIMAERKRREMLSQSFIALAALIPDLKKMDKASILAETIKYVKELQERLKILEQKEKNPKADQSTVTPIKPKVNNDEHYSSTDESTETESAADGSPTESLFKVEAKVSEQHMLIRIHCQKHNGLLVKIISKIQSFELFVVNNSVLAFGDSILDITIIAEIGEGYNLTVKELVHNIRMAALKFMST 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02659 370 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983
Vivi1g02659 370 MobiDBLite consensus disorder prediction 170 191 - -
Vivi1g02659 370 MobiDBLite consensus disorder prediction 246 260 - -
Vivi1g02659 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 248 IPR036638 GO:0046983
Vivi1g02659 370 MobiDBLite consensus disorder prediction 239 282 - -
Vivi1g02659 370 SMART finulus 187 236 IPR011598 GO:0046983
Vivi1g02659 370 Coils Coil 220 247 - -
Vivi1g02659 370 Gene3D - 179 252 IPR036638 GO:0046983
Vivi1g02659 370 MobiDBLite consensus disorder prediction 152 169 - -
Vivi1g02659 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Vivi1g02659 370 PANTHER BHLH TRANSCRIPTION FACTOR 69 367 - -
Vivi1g02659 370 MobiDBLite consensus disorder prediction 152 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02659 Vivi-Chr1 56423989 56427132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02659 129 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.805 7.65e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g02659 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02659 - - vvo:131606754 693.73