Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02655 ATGGCTGGTTTGGATTTAGGAAGTGCATCGCGCTTTATGCAAAACCTCCACAGACAAGACTTGCACCTCCAGCATCAGCAACAACACCATCACGATTCCGAAGAGCAAGAATCGAATCGAGTTGGTGGCGGTGTTGGTGGTGGTGCAGCACCGTTTTCATCCAACGACGACGATGACCGAAGCCAAGGCTTGGAGTTAGGTTCGGCTGCGGGTCCAGGTGACGTAGTCGGACGTCGTCCACGTGGCAGACCGCCAGGCTCGAAAAACAAGGCGAAACCGCCGGTGATTATTACGAGAGAAAGCGCCAACACTCTCAGAGCTCATATTCTCGAAGTTGCTAGCGGTTCCGATGTTTTTGAATGTGTTACGAACTACGCTCGTCGCCGTCAGCGTGGGATCTGTGTTTTGAGCGGGACTGGGACGGTTACGAATGTTAGTCTCAGGCAGCCGGCGGCGGCTGGTGGTGCTGTGACTCTTCATGGAAGATTTGAGATATTGTCTTTGTCTGGATCTTTTCTGCCACCGCCGGCTCCTCCTGGTGCTACTAGTCTGACGATTTATCTTGCAGGAGGTCAGGGACAGGTGGTGGGAGGAAGTGTGGTTGGCGAACTCATTGCGGCGGGACCGGTGATTGTGATTGCTGCTTCGTTTACTAATGTGGCTTATGAGAGGCTTCCTTTGGATGAAGAGGAGCAGGTTCAGATGCAGCAAGTAGCTGGCGGTGGTGGTGGTTCTCAAAGCTCTGGTGGTGGTGGCGGTGGTGGAGGAGGAGGTGGAAACACTAGTCCATTTCCTGATCCATCTTCTGGTTTGCCGTTTTTCAATCTGCCTATGAATATGCAGAATGTTCAGTTGCCTGTTGACGGTGGTGTTTGGGCGGGAAACAACTCAGCTTCACGTCAACCTTTTTGA 912 0.5263 MAGLDLGSASRFMQNLHRQDLHLQHQQQHHHDSEEQESNRVGGGVGGGAAPFSSNDDDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTNYARRRQRGICVLSGTGTVTNVSLRQPAAAGGAVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLDEEEQVQMQQVAGGGGGSQSSGGGGGGGGGGGNTSPFPDPSSGLPFFNLPMNMQNVQLPVDGGVWAGNNSASRQPF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02655 303 MobiDBLite consensus disorder prediction 21 95 - -
Vivi1g02655 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 276 IPR014476 GO:0003680
Vivi1g02655 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 219 IPR005175 -
Vivi1g02655 303 Gene3D - 105 239 - -
Vivi1g02655 303 ProSiteProfiles PPC domain profile profile. 102 239 IPR005175 -
Vivi1g02655 303 MobiDBLite consensus disorder prediction 234 275 - -
Vivi1g02655 303 CDD DUF296 106 189 IPR005175 -
Vivi1g02655 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 234 - -
Vivi1g02655 303 MobiDBLite consensus disorder prediction 22 38 - -
Vivi1g02655 303 FunFam AT-hook motif nuclear-localized protein 105 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02655 Vivi-Chr1 56253573 56255578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02655 1 303 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.300 5.14e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02655 - - pvu:PHAVU_003G230600g 369.007