Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02654 ATGGATTCCCGCTCACCTCCACCACCACCCACCATGATGGTGGGCCCCACATCTTACGCTCCGACCAACACCTCCATGATCAGCCCTAATTCCTCCACCACCAACCTCATGTCTCCGGCCACCGCTCGTTTTCCTTTCACCTCGCAGCAGCAATCGGACCCGTTCGCCGTCACTCACGACAGCCCTTCTTCGCCGTCCACGCTCGGCAAGAAGAAGCGTGGCCGGCCGAGGAAATACTCCCCCGACGGTAACATTGCCCTTGCTTTGGCTCCGAATCGTGTCTCTTCGCCTGCTGCTGCGACATCCGCTTCTGCTGGAGATTCCGGAAACGCGGAGGCTCCTGCGAAGAAACATAGAGGAAGACCTCCTGGCTCTGGGAAGAAACAGTTAGATGCGCTTGGTGCTGGTGGGATTGGATTCACTCCACACGTTGTCTTGGTGGAGTCTGGTGAGGACATTACAGAAAAAGTTATGGCCTTTTCTCAGTCAGGGCCTCGAACAGTTTGTATTCTTTCTGCCAATGGTGCAATCAGCAGTGCAACCCTTCGACAGCCATCTGGTGGTATTGCAAGATACGAGGGCCAATTTGAGATCATATCGTTATCAGGTGACATGCACCTATCTGAAAACAATGGTGAACAAAGCAGACCAAGCAGTTTATACGTTTCTCTTGCAGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGGGTTCTAATTGCAGCGTCAACGATACAGGTCATTGTGGGTAGCTTTATTATGGATCTGAAAAAGTCAAACTCAAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCCCAAATGTTGAACTTCGGTGCACCTACAACTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAATCCTCAGAGGAAAATGAGCATAATGATCATAATAGTAATTTTAGTAGGGGGCCTGCACTCTACAACAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGCAGATGTACCACCATCCACTATGGGCTGGCCAAACTCATCAGTGA 1038 0.5048 MDSRSPPPPPTMMVGPTSYAPTNTSMISPNSSTTNLMSPATARFPFTSQQQSDPFAVTHDSPSSPSTLGKKKRGRPRKYSPDGNIALALAPNRVSSPAAATSASAGDSGNAEAPAKKHRGRPPGSGKKQLDALGAGGIGFTPHVVLVESGEDITEKVMAFSQSGPRTVCILSANGAISSATLRQPSGGIARYEGQFEIISLSGDMHLSENNGEQSRPSSLYVSLAGADGRVLGGAVAGVLIAASTIQVIVGSFIMDLKKSNSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENEHNDHNSNFSRGPALYNNANQPVHNNMQQQMYHHPLWAGQTHQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02654 345 MobiDBLite consensus disorder prediction 1 133 - -
Vivi1g02654 345 MobiDBLite consensus disorder prediction 1 15 - -
Vivi1g02654 345 SMART AT_hook_2 70 82 IPR017956 GO:0003677
Vivi1g02654 345 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Vivi1g02654 345 MobiDBLite consensus disorder prediction 16 68 - -
Vivi1g02654 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 253 IPR005175 -
Vivi1g02654 345 ProSiteProfiles PPC domain profile profile. 136 275 IPR005175 -
Vivi1g02654 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 254 - -
Vivi1g02654 345 MobiDBLite consensus disorder prediction 309 323 - -
Vivi1g02654 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 308 IPR039605 GO:0003680
Vivi1g02654 345 MobiDBLite consensus disorder prediction 261 298 - -
Vivi1g02654 345 CDD DUF296 141 253 IPR005175 -
Vivi1g02654 345 Gene3D - 142 266 - -
Vivi1g02654 345 MobiDBLite consensus disorder prediction 261 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02654 Vivi-Chr1 56215894 56225026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02654 48 293 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 48.736 3.15e-68 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02654 - - gmx:100789717 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03576 2 143942173 143945853 Vivi1g02654 1 56215894 56225026 PCT