LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g02650	ATGGCTTCTATTTCAATGGAGAGTTTGGGGTCGAGCGAAGATGATGAACCAACACTTAATACTACACAAGGTGTTCATATACTAAAATCGGTGCAGACAAATCAAGAGGTTCTAAATTGTGACGAAGAAATCAAACCTAAAGTAGGACAACTTTTTGATTCACTTGAAGATGGTGAAATTTTTTACAAAAAATATGCACACACTGTTGGATTTAGTGTGCGTTGCTCATCAGAAAATAAAAATAAAGATGGTGTTGTACGTTGGAAGTATTTTGTTTGCTCAAAAGAGGGTTACAACCCAAATGTATCAAAAGACAAAGAAGTGACTGAATCAGGAGTTAAACTCAAGAGGAGAAGTCTTACTAGAGAAGGATGTGAGGCAAAAGTTGCTTTCAAACTATTAGAGGGAGGTAAGTATGAGCTAACTCGATTTCAAGAAAGTCATACTCATGTACTTGCCTCTCCTAAAAAGAGACAATTTCTTAGATCGGCAAGAAAAGTGAATCATATTCATAAGAGTATAATGTATGCAAATAGTAGAGCAAATATTGGTCCTTCAAAAACATACCACTTGTTGAAGGAACAACTAGGTGGTTATGAAAATATTGGGTGCACACAGAGAGATCTACAAAATTGTTTTAGAGATTTAAAGACCTTAATTAAAGATTCGGATGCATATGTCTTCATTGATAACTTTAAAAGGAAGCAAGAAATGAATCCATCATTTTATTTTGCATATGAGGTTGATGTTGAAGATCGGTTGAAATATGTTTTCTGGGCAGATGGAATTTGTAGAAAAAATTACTCCTTATTTGGAGATGTGATGTCGTTCGACACTACATATGAAACAAATAGGTTTTGTATGTGGCATATCATGAAAAAAGTTTCTGAAAAGGTGGGTGTTTCCTTGAATTCCAATGATGATTTCAACAATAAATTTAAGTCATGTGTTTGGGGATCAGATACTCCCGACAAATTTGAAGCAACGTGGAAATCCATCATGATTGAGTTTGGATTGGAAAAGAATGAATGGCTTTCACACATGTATAATATTCGAAATATGTGGATCCCAGCTTACTTCAGAGATATATTTTTGGGTGGCATATTGAGAACAACCTCAAGATCAGAAAGTGAAAATTCCTTCTACGGTAACTTTTTAAATCCTACTATTGGTTTGGTTGAATTTTGGATGAGATTTGAGTCTGCTATAGAAGCTCAAAGACATAAAGAGTTACTTGCTGATAATACTTCACTTCACTCTTTACCAATATTAAAATTAAATCGTGGACTAGAGAGGCATGGTAGAGATATTTACACTCGTGAAAACTTTTATATATTTCAAAATGAATTATGGATTGGATGTATAGACTGCGGGGTAGAAAATATAAACCAAAAAGATGGTGTGGATGTATTGCATATAGTTGATAATAGTGAAACAAATGGTAAAGTAAGCGAGTCTTTTATTGGTTTTGATATTCCTAAAGAAGTGAAAATTCATCCACCACAAATTTCAAAGACAAAAGGAAGTGGTAAACGAATTAAAGGAGGAAAAGAAAAGGCTATTGAACAACAACAAAAAAGATCCAGGCTTTGTAAAGCATGTGGCCAATATGCATATCATGATACTCGTAATTGTCCTACGAAATCATCTGCCTAA	1656	0.3406	MASISMESLGSSEDDEPTLNTTQGVHILKSVQTNQEVLNCDEEIKPKVGQLFDSLEDGEIFYKKYAHTVGFSVRCSSENKNKDGVVRWKYFVCSKEGYNPNVSKDKEVTESGVKLKRRSLTREGCEAKVAFKLLEGGKYELTRFQESHTHVLASPKKRQFLRSARKVNHIHKSIMYANSRANIGPSKTYHLLKEQLGGYENIGCTQRDLQNCFRDLKTLIKDSDAYVFIDNFKRKQEMNPSFYFAYEVDVEDRLKYVFWADGICRKNYSLFGDVMSFDTTYETNRFCMWHIMKKVSEKVGVSLNSNDDFNNKFKSCVWGSDTPDKFEATWKSIMIEFGLEKNEWLSHMYNIRNMWIPAYFRDIFLGGILRTTSRSESENSFYGNFLNPTIGLVEFWMRFESAIEAQRHKELLADNTSLHSLPILKLNRGLERHGRDIYTRENFYIFQNELWIGCIDCGVENINQKDGVDVLHIVDNSETNGKVSESFIGFDIPKEVKIHPPQISKTKGSGKRIKGGKEKAIEQQQKRSRLCKACGQYAYHDTRNCPTKSSA	551

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g02650	551	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	40	472	IPR031052	GO:0006355
	Vivi1g02650	551	MobiDBLite	consensus disorder prediction	501	523	-	-
	Vivi1g02650	551	Pfam	FAR1 DNA-binding domain	61	152	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g02650	Vivi-Chr1	56119466	56121802	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vivi1g02650		FAR1	4.1e-18	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g02650	-		-	vvo:131642960	1138.25