Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02648 ATGCCAGTTCCACTTGCCCCCTACCCAACTCCACCACCAGCTCCATATACACCACCACCAACAAATGGTTCACAAAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTGGTGTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGTACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACGAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGTAACTGCAGGATGCTTCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCTTCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 444 0.473 MPVPLAPYPTPPPAPYTPPPTNGSQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02648 147 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g02648 147 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Vivi1g02648 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Vivi1g02648 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Vivi1g02648 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Vivi1g02648 147 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Vivi1g02648 147 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Vivi1g02648 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Vivi1g02648 147 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02648 Vivi-Chr1 56106872 56110473 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vivi1g02648 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02648 - - mnt:21406053 263.462