Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02643 ATGGGTTGCACGGTGAGAGAAAAGCACATCAGAGCTAATCGGCGACCTCGATCGGTGAAACACGATTCCGATTCCTCCGATAACAAAGACGCAATATCCAAATCCATAGCCGAGTCCGGTCTCAAACCCTTCAAATACGATATTTCTCGCGTCGATTCCTCTTCTTCGCATACTCTTATTCCTCTTCCCTATCCAAACCCTAATTCCGATGAAACCGGTTGGGGTTACTGCACCGAGGAGCAGTTAGAAGAGATCCTTTTGAAGAATTTGGAGTTTGTTTACAATGAAGCTGTTTCGAAGATTGTTGCGTTGGGTTACGATGAAGAGGCTGCTTTGAAGGTTATTTTGCGGAATGGTCATTGTTATGGTGGTATGGATGTTTTGACTAACATTTTGCATAATTCGTTGTCGTATTTGAATACCAATGGTAGTGTTGCTGTTGCTGGTGGTGTTGGTTTTGGGGATGGGGTTAGTAGTAATAGGAATTCGGAGGAGGCTGAGCCGGTTTTCTCTGATTTGAGGCATTTGGAGGAGTACTCATTGGCTGGTATGGTGTGTTTGTTGCAACAGGTTAGGCCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGGAAAGCTAGTACTATGGAGATTCCTGTGCCTGGCGGTGCGGTTCCTAGTCGTCCGCCTGCTGTTGTTGAGTCTGGTCAGTCTGGTCGTGGTTCTGTTGGTGTTAGGGCTTCTCCGCTGTGTAAGTTTCATGGAGGGTGGGGATTTGAGAACGGGGATTATCCGACGAATAGGATATTGAATTGCGGTCCGGACTTGCAAAGAGAGATTGAGTTCCCGAAGAGGTTTGATCTTTCGCCTTCCATGAAGGATTTGTTGAAGAGAAATGTTACCATGTTTGCTGCTGGTTTTAGAGCAAACACCAAACTGCAGTTGCAGGCGAAGGCCAACCTTCCTGGCCGTAGCGCTATGCCTAATTTGGATTCTCCGGTTGTATCGGGGGTTGATGTCACGGTTGATCAGTGTGGACATTCTCGGTTTCCTGATAACCAAGATGCTGTGAATTCAGTGCTGAGTAAATTCCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGCGGCAGAGGATCAGAAGGATGAGGTGATAGTAAGTATATTTCATCAGATTAAAGATTTGGAGAAACAGGCCAAAGAACGAAAAGAATGGGCTCATCAGAAAGCACTGCAAGCGGCAAAGAAGCTAAGCAGTGATATGACCGAACTCAAAACATTACGGATGGAAAGAGAGGAGACCCAAAAATTGAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGAAACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGACAAGTGGACCGTGCAAATGGAGCGGTGAGAAGATTAGAGACTGAAAATGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTGGAAGTTGCGAAAAAGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAGGCTAAGCTACAGAAGGAAGTTTCCAATATGAAAGAGAAGATATCAGAGGCACAACAAGTTTTGGCTCAGACTTCACAGCGCCAAAAAGAAGCCGAGATTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCGTTGGCACTAGTTGAGGAGGAGCGCCGAGCCAAGGAAACAGCTGAATCAAATAATAAGAGGGGATTTGAGGCTTTGCGTCTGAAGATAGATATAGATTTCCAGCGCCACAAGGATGATCTGCGCAGACTTGAGCATGATCTTTCGCGCCTTAAAGCATCTGTTCATTCTGCTGTGTTGCATCACCAGTCAATTACTTCACCTGTAAGTGGCTTTGAGGGTACAAAGCCTCAAAGAGAGTCAATTGCTAAGCTGCTTCTGGATTTGGATAACCTGGATGATTTATCAGAAAAAGAAGCCAATAACAACAGAGAATGCATCATATGTATGAAAGATGAGGTTTCTGTTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGAAAAAAGGGAAAGGCTTCTTGTCCTTGCTGCCGGGTACAAATCCAACAGAGAATCCGTGTGTTTGGGGCATGCTCTTAG 2184 0.4473 MGCTVREKHIRANRRPRSVKHDSDSSDNKDAISKSIAESGLKPFKYDISRVDSSSSHTLIPLPYPNPNSDETGWGYCTEEQLEEILLKNLEFVYNEAVSKIVALGYDEEAALKVILRNGHCYGGMDVLTNILHNSLSYLNTNGSVAVAGGVGFGDGVSSNRNSEEAEPVFSDLRHLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTMEIPVPGGAVPSRPPAVVESGQSGRGSVGVRASPLCKFHGGWGFENGDYPTNRILNCGPDLQREIEFPKRFDLSPSMKDLLKRNVTMFAAGFRANTKLQLQAKANLPGRSAMPNLDSPVVSGVDVTVDQCGHSRFPDNQDAVNSVLSKFRDLNLDENLEFAAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHQKALQAAKKLSSDMTELKTLRMEREETQKLKKGKQALEDTTMKKLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKKEKKCLKKLLAWEKQKAKLQKEVSNMKEKISEAQQVLAQTSQRQKEAEIKWKEELKAQEDALALVEEERRAKETAESNNKRGFEALRLKIDIDFQRHKDDLRRLEHDLSRLKASVHSAVLHHQSITSPVSGFEGTKPQRESIAKLLLDLDNLDDLSEKEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKKGKASCPCCRVQIQQRIRVFGACS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02643 727 MobiDBLite consensus disorder prediction 17 31 - -
Vivi1g02643 727 Coils Coil 453 494 - -
Vivi1g02643 727 Pfam Zinc finger, C3HC4 type (RING finger) 670 718 - -
Vivi1g02643 727 PANTHER OS05G0141500 PROTEIN 1 722 IPR046934 -
Vivi1g02643 727 Coils Coil 601 621 - -
Vivi1g02643 727 Coils Coil 516 582 - -
Vivi1g02643 727 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g02643 727 ProSiteProfiles Zinc finger RING-type profile. 673 713 IPR001841 -
Vivi1g02643 727 SMART ring_2 673 712 IPR001841 -
Vivi1g02643 727 CDD RING-HC_MIP1-like 671 722 - -
Vivi1g02643 727 SUPERFAMILY RING/U-box 672 719 - -
Vivi1g02643 727 Pfam Family of unknown function (DUF6592) 89 215 IPR046527 -
Vivi1g02643 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 724 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02643 Vivi-Chr1 56016986 56022935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02643 664 723 C3H Transcription Factor Family AT1G73950 41.667 1.84e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02643 - - gmx:100777787 1027.31