Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02638 ATGGGAGAGACATCATTGCCACCCGGTTTTCGATTCCATCCAACCGATGAAGAGCTAGTAGGATACTATCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGATGTTATACCAGTCATTGATTTTTACAAGTTTGATCCATGGGAACTGCCTGAGAAATCGTTTCTACCAAAACGAGATTTAGAATGGTTTTTCTATTGTCCACGCGATAGAAAGTATCCAAATGGATCAAGAACAAATAGAGCTACCAAAGGTGGTTACTGGAAAGCCACCGGAAAAGAGAGAAAGATTGTGTGTCAAGGCACTTCATCTACTATCACAGGAAACTGCAAAAAACTTGTTTTCTATATTGGAAGGGCCCCTTTATGGAATAGAACTAGCTGGATCATGCACGAGTATCGCCTCAGCGATGATCTTGGCCAAGACTCTCCGTATTTTAAGGGTGGTTTTGCTTTGTGCCGAGTTACTAAAAAGAATGAAAAGAGAAAGAGGATTGTAACATGTTCCGGTGATGTTTCTTCACAAGCAAGTCACATGAATAATGAGATTGGATATTCAAGCCTTGTTACTTTTAAGCAAAATGTGGCTCCAATCGCTGAGCTTAACCATGTTTCAGTAGAAATCAATCCTTCAAATTTATGTATATCCCCTGATATGATTCTTGATTCTTCAAAGGAGTATACTAAAGTGCAAGATGCAGTGGCTCGATATTTTCCTAGGCATGACTCACCGAATCAATCGTTGGAACAAATAACAGTTTCACCTACTTTATTCTTCTCAAATTTAAGTAGTGAAATTGAATTTTCTGATAATGTAAGTCAAATTGGATGCATGTCACCTTACTCAAGTCAAGGGAATTTCATGGACTATTATGGAAATTGGGATGTTCCTTATGAGGCTTATGATCAAATTAATTCAGTCTCATATCAAGATCCAATTTGA 945 0.3778 MGETSLPPGFRFHPTDEELVGYYLKRKVEGLEIELDVIPVIDFYKFDPWELPEKSFLPKRDLEWFFYCPRDRKYPNGSRTNRATKGGYWKATGKERKIVCQGTSSTITGNCKKLVFYIGRAPLWNRTSWIMHEYRLSDDLGQDSPYFKGGFALCRVTKKNEKRKRIVTCSGDVSSQASHMNNEIGYSSLVTFKQNVAPIAELNHVSVEINPSNLCISPDMILDSSKEYTKVQDAVARYFPRHDSPNQSLEQITVSPTLFFSNLSSEIEFSDNVSQIGCMSPYSSQGNFMDYYGNWDVPYEAYDQINSVSYQDPI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02638 314 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Vivi1g02638 314 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Vivi1g02638 314 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Vivi1g02638 314 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 225 - -
Vivi1g02638 314 FunFam Nac domain-containing protein 86 15 162 - -
Vivi1g02638 314 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02638 Vivi-Chr1 55989262 55991103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02638 1 245 NAC Transcription Factor Family AT4G17980 59.761 4.49e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g02638 NAM 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02638 - - mtr:11415472 493.812