Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02629 ATGGTTTGTACTGCTAATGATTTACAACAATGGAAGGATTTTCCCAAAGGTCTCAAGGTTCTTCTCCTTCAGGAAGACACTGCTTGTGCTGATGAGATAAGAACAAAGCTTGAGGCCATGGACTATATTGTTTCTATATTCTGCGACGTGAATGAAGCGTTGTCAGCAATCTCAAATAGACCTGAAGGCTTCCATATAGCCATAGTGGAGGTGAGTTCACACAGTTGCGAGGGAGGTTTCAAATTTCTTGAGAATACAAAGGACTTGCCAACCATTATGACTTCAAACAACGATTGTCTGAACACCATGATGAAGTGCATAGCGCTTGGGGCAGTGGAGTTCCTCAGCAAACCACTCTCCGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGCAAGTGTCAAGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATCTTGCAACTCCAAACAGACAATGAACAGCACGAAAGTAGTGCATCGGTTGAGTTAGAAAAAGTATCTGGGTTTTCTGACAATGACCCCGAGCATTATCCAGCTCCTTCAACCCCACAACTGAAACAGTTGGAAAGATTACTAGACGATGGGGATTGCCAGGAGCAGACTAATTGCTCCATGGATAAAGAAAGTGGGGAGCATGATGGAGAATCTAAATCTGTCGAAACTACTTGTGAAAATTTGAATGCTGAGAGTATTCGCCAAGACCAGACTAATTGCTCCATGGAAAAAGAAAGTGGAGAGCATGATGAAGAATCTAAATCTGTCGAAATTACTTGTGAAAATTTGAATGCTGAGAGTACTCGCCAAGAGCAGACTAATTGCCCCACAGATAAAGAAAGTGGAGAGCATGATGGAGAATCTAAGTCTGTCGAAATTACTTGTAAAAATTTGAATGCTGAAAGCACTCGAAAATCTGAAGTTACTTTGGTTCAAAACGAAGAGGAGGATTTTATGGACACTTCTAAATGTGAGAGTGTTGTTACTCCACATCCACAAACTGTGAAGGTTCTCACCAATACTGAAAGTAATACTACATCTGCAAATAAAGTGGGCATTCGTAATCATAAATGTGAAATAAAAGCGAATAGAAAGAAGATGAAAGTAGACTGGACACCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCATGCTATTCCTTCTCGTATATTGGATTTAATGAAAGTGGACAGCTTAACAAGACATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGCGACATATCTTGCCGAAGCAAGAGGACCGGAAATGGCTATATCAAAGAGATCCAATGCAGAGGGGTTATTGTTTTCAAAGGCCAATTATGCCTTGTCCTCCGTCGTATTATTCTAACCACGCCCTTCCTCAAGCTCCTTTATATCCTATGTGGGGACAATCTGGGAGTCAAATGGCCGGCATGCCTATTTGGGGGCCGTCCAGTTATCCTGTTTGGCAGCCTACAGAAAGTTGGCACTGGCAACCATTTCCAGGGATGCATTCAGATGCTTGGGGCTGCCCCGTCTTACCACCACCTCAAGCTCAATGCTTTTCCTACACTCAACAGAATATACCTGCCTTGAGCAATGATAATAATGTAATGGATTACACGTTTAGCACGCCCAACAGTTCCTTAGACGATTATCCGGAAGAGGCGATTATTGACAAGGTTGTGACGGAGGCAATGAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAAACCGCCTTCCACGGATAGTGTGTTGACTGAGCTTTCAAGGAAAGGCATTTCCAGCATCCCTCCAAGCAATAATAGCTGTATTCCCATTTGA 1866 0.4303 MVCTANDLQQWKDFPKGLKVLLLQEDTACADEIRTKLEAMDYIVSIFCDVNEALSAISNRPEGFHIAIVEVSSHSCEGGFKFLENTKDLPTIMTSNNDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASVKSESLKPVKESVVSILQLQTDNEQHESSASVELEKVSGFSDNDPEHYPAPSTPQLKQLERLLDDGDCQEQTNCSMDKESGEHDGESKSVETTCENLNAESIRQDQTNCSMEKESGEHDEESKSVEITCENLNAESTRQEQTNCPTDKESGEHDGESKSVEITCKNLNAESTRKSEVTLVQNEEEDFMDTSKCESVVTPHPQTVKVLTNTESNTTSANKVGIRNHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVDSLTRHNVASHLQKYRMHKRHILPKQEDRKWLYQRDPMQRGYCFQRPIMPCPPSYYSNHALPQAPLYPMWGQSGSQMAGMPIWGPSSYPVWQPTESWHWQPFPGMHSDAWGCPVLPPPQAQCFSYTQQNIPALSNDNNVMDYTFSTPNSSLDDYPEEAIIDKVVTEAMSKPWLPLPIGLKPPSTDSVLTELSRKGISSIPPSNNSCIPI 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02629 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 373 432 IPR017930 -
Vivi1g02629 621 MobiDBLite consensus disorder prediction 275 299 - -
Vivi1g02629 621 Gene3D - 18 145 - -
Vivi1g02629 621 PANTHER TRANSCRIPTION ACTIVATOR GLK1 280 614 IPR044825 GO:0003700|GO:0045893
Vivi1g02629 621 NCBIfam myb-like DNA-binding domain, SHAQKYF class 376 431 IPR006447 GO:0003677
Vivi1g02629 621 Gene3D - 372 434 - -
Vivi1g02629 621 FunFam Two-component response regulator 372 435 - -
Vivi1g02629 621 MobiDBLite consensus disorder prediction 210 232 - -
Vivi1g02629 621 MobiDBLite consensus disorder prediction 217 231 - -
Vivi1g02629 621 SUPERFAMILY CheY-like 16 134 IPR011006 -
Vivi1g02629 621 SUPERFAMILY Homeodomain-like 375 433 IPR009057 -
Vivi1g02629 621 Pfam Myb-like DNA-binding domain 379 428 IPR001005 -
Vivi1g02629 621 SMART REC_2 18 128 IPR001789 GO:0000160
Vivi1g02629 621 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vivi1g02629 621 FunFam Two-component response regulator-like APRR2 17 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02629 Vivi-Chr1 55604761 55609590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02629 1 619 Response Regulator Gene Family AT4G18020 37.327 4.56e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi1g02629 Myb_DNA-binding 6.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02629 - - vvo:131638406 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03603 2 144722455 144727194 Vivi1g02629 1 55604761 55609590 PCT