Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02626 ATGGTTTGTACTGCTAATGATTTACAACAATGGAAGGATTTTCCCAAAGGTCTCAAGGTTCTTCTCCTTCAGGAAGACACTGCTTGTGCTGATGAGATAAGAACAAAGCTTGAGGCCATGGACTATATTGTTTCTATATTCTGCGACGTGAATGAAGCGTTGTCAGCAATCTCAAATAGACCTGAAGGCTTCCATATAGCCATAGTGGAGGTGAGTTCACACAGTTGCGAGGGAGGTTTCAAATTTCTTGAGAATACAAAGGACTTGCCAACCATTATTTTTGATACAGTGACTTCAAACAACGATTGTCTGAACACCATGATGAAGTGCATAGCGCTTGGGGCAGTGGAGTTCCTCAGCAAACCACTCTCCGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGCAAGTGTCAAGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATCTTGCAACTCCAAACAGACAATGAACAGCACGAAAGTAGTGCATCGGTTGAGTTAGAAAAAGTATCTGGGTTTTCTGACAATGACCCCGAGCATTATCCAGCTCCTTCAACCCCACAACTGAAACAGTTGGAAAGATTACTAGACGATGGGGATTGCCAGGAGCAGACTAATTGCTCCATGGATAAAGAAAGTGGGGAGCATGATGGAGAATCTAAATCTGTCGAAACTACTTGTGAAAATTTGAATGCTGAGAGTATTCGCCAAGACCAGACTAATTGCTCCATGGAAAAAGAAAGTGGAGAGCATGATGAAGAATCTAAATCTGTCGAAATTACTTGTGAAAATTTGAATGCTGAGAGTACTCGCCAAGAGCAGACTAATTGCCCCACAGATAAAGAAAGTGGAGAGCATGATGGAGAATCTAAGTCTGTCGAAATTACTTGTAAAAATTTGAATGCTGAAAGCACTCGAAAATCTGAAGTTACTTTGGTTCAAAACGAAGAGGAGGATTTTATGGACACTTCTAAATGTGAGAGTGTTGTTACTCCACATCCACAAACTGTGAAGGTTCTCACCAATACTGAAAGTAATACTACATCTGCAAATAAAGTGGGCATTCGTAATCATAAATGTGAAATAAAAGCGAATAGAAAGAAGATGAAAGTAGACTGGACACCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCATGCTATTCCTTCTCGTATATTGGATTTAATGAAAGTGGACAGCTTAACAAGACATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGCGACATATCTTGCCGAAGCAAGAGGACCGGAAATGGCTATATCAAAGAGATCCAATGCAGAGGGGTTATTGTTTTCAAAGGCCAATTATGCCTTGTCCTCCGTCGTATTATTCTAACCACGCCCTTCCTCAAGCTCCTTTATATCCTATGTGGGGACAATCTGGGAGTCAAATGGCCGGCATGCCTATTTGGGGGCCGTCCAGTTATCCTGTTTGGCAGCCTACAGAAAGTTGGCACTGGCAACCATTTCCAGGGATGCATTCAGATGCTTGGGGCTGCCCCGTCTTACCACCACCTCAAGCTCAATGCTTTTCCTACACTCAAAATATACCTGCCTTGAGCAATGATAATAATGTAATGGATTACACGTTTAGCACGCCCAACAGTTCCTTAGACGATTATCCGGAAGAGGCGATTATTGACAAGGTTGTGACGGAGGCAATGAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAAACCGCCTTCCACGGATAGTGTGTTGACTGAGCTTTCAAGGAAAGGCATTTCCAGCATCCCTCCAAGCAATAATAGCTGTATTCCCATTTGA 1875 0.4288 MVCTANDLQQWKDFPKGLKVLLLQEDTACADEIRTKLEAMDYIVSIFCDVNEALSAISNRPEGFHIAIVEVSSHSCEGGFKFLENTKDLPTIIFDTVTSNNDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASVKSESLKPVKESVVSILQLQTDNEQHESSASVELEKVSGFSDNDPEHYPAPSTPQLKQLERLLDDGDCQEQTNCSMDKESGEHDGESKSVETTCENLNAESIRQDQTNCSMEKESGEHDEESKSVEITCENLNAESTRQEQTNCPTDKESGEHDGESKSVEITCKNLNAESTRKSEVTLVQNEEEDFMDTSKCESVVTPHPQTVKVLTNTESNTTSANKVGIRNHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVDSLTRHNVASHLQKYRMHKRHILPKQEDRKWLYQRDPMQRGYCFQRPIMPCPPSYYSNHALPQAPLYPMWGQSGSQMAGMPIWGPSSYPVWQPTESWHWQPFPGMHSDAWGCPVLPPPQAQCFSYTQNIPALSNDNNVMDYTFSTPNSSLDDYPEEAIIDKVVTEAMSKPWLPLPIGLKPPSTDSVLTELSRKGISSIPPSNNSCIPI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02626 624 FunFam Two-component response regulator 376 439 - -
Vivi1g02626 624 SUPERFAMILY CheY-like 16 138 IPR011006 -
Vivi1g02626 624 MobiDBLite consensus disorder prediction 214 235 - -
Vivi1g02626 624 Pfam Myb-like DNA-binding domain 383 432 IPR001005 -
Vivi1g02626 624 Gene3D - 18 149 - -
Vivi1g02626 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 377 436 IPR017930 -
Vivi1g02626 624 PANTHER TRANSCRIPTION ACTIVATOR GLK1 275 617 IPR044825 GO:0003700|GO:0045893
Vivi1g02626 624 ProSiteProfiles Response regulatory domain profile. 19 136 IPR001789 GO:0000160
Vivi1g02626 624 MobiDBLite consensus disorder prediction 221 235 - -
Vivi1g02626 624 SUPERFAMILY Homeodomain-like 379 437 IPR009057 -
Vivi1g02626 624 NCBIfam myb-like DNA-binding domain, SHAQKYF class 380 435 IPR006447 GO:0003677
Vivi1g02626 624 Gene3D - 376 438 - -
Vivi1g02626 624 MobiDBLite consensus disorder prediction 278 303 - -
Vivi1g02626 624 FunFam Two-component response regulator-like APRR2 17 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02626 Vivi-Chr1 55604759 55609590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02626 1 622 Response Regulator Gene Family AT4G18020 37.003 1.50e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi1g02626 Myb_DNA-binding 6.1e-08 CL0123