Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02620 ATGGCATTCTCTCTTTTGTGTTTTGTTCTCCTTGCCACCTTTCTTTTCATGCAAACTTTGGCTGATACTTCATGCACCGATTGTTTTGTTCAGTCTCGTGCATCATTTTACTCAAACTCTGAAGAAAATGGCACAGATGCTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACCATTAATGGCGGGGATGTATCGGCTGCATCAAACCTTTATCGAGATGGAGTTGGCTGCGGCGCTTGTTACCAGGTAAGGTGTACCAACGGTGGTTATTGCTCAAGCAACGGTGTCACCATAGTTTTAACGGACCAAGGCTCAGGTGATAACACAGACTTCATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCAAAGCAAAGATGCATCCGCTTCTTTATTAACACTTGGTGTAGTTGATATTGAATACAGAAGGGTTTCATGTAGCTACCCTAACAAAAACATCACAATTAAGATTGATGAAAGCAGCAGCAACCCTAATTACTTGGCTTTTGTCATATGGTTTCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGAGTCATGGCGCAGTCTGGACTGCTACCCCTCCACCGAGTGGACCTTTGTCTCTAAGGATGCTGTTTAGTACTGAAGATGGAGACGATACATGGGTCGTTCCTGTTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATATGACTCAGGAGTACAAGTAGACCAGTAG 765 0.4458 MAFSLLCFVLLATFLFMQTLADTSCTDCFVQSRASFYSNSEENGTDAGACGFGSFGATINGGDVSAASNLYRDGVGCGACYQVRCTNGGYCSSNGVTIVLTDQGSGDNTDFILSQRAFGGMAQSKDASASLLTLGVVDIEYRRVSCSYPNKNITIKIDESSSNPNYLAFVIWFQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTATPPPSGPLSLRMLFSTEDGDDTWVVPVNNIPEDWKAGETYDSGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02620 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Vivi1g02620 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Vivi1g02620 254 Gene3D - 148 252 IPR036749 -
Vivi1g02620 254 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Vivi1g02620 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vivi1g02620 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Vivi1g02620 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vivi1g02620 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vivi1g02620 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Vivi1g02620 254 CDD DPBB_EXLB_N 30 146 - -
Vivi1g02620 254 PANTHER EXPANSIN-B3 15 251 - -
Vivi1g02620 254 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Vivi1g02620 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Vivi1g02620 254 Gene3D - 17 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02620 Vivi-Chr1 55404006 55405559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02620 9 250 Expansin Gene Family AT4G17030 43.033 5.96e-61 191