Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02583 ATGACTCTATGTCTCAGTGTGATTTCTGACATCGTTCCTCCAAAACTGAACTGGCAGATTAAAGTTCGTATACGAAGTTTGTGGAAAGTTCATTCTTGGAATGACCACAATACTATTACCAGTTTAGAAATGATTTTGATTGATGAAAAATGTTCAAGTATCCAAGCTTCGGTGAAATCGACACTAATCAGTGAATTTGACTCAAATCTTGAAGAGGGATCTTGCTATATAATTTCTAATATATTGGTTGGATTGCATGATCCTAAATTTATTATGACAGACCATAAGTACAAGATTAACTTCATCAAAACCACCAGTTGTACTAAGATTGGAGATGTTCCATCCATTCCTAAAACTTATTTTAAATTTGTAACTTTTCCTCAAATTTTGACTGGGCTTGACCAAACACGTGCAATAGATGTCATTGGTCACGTGATTAAAAAGTTTGACATGAAGGAAACAATGAGAAGTGGAATTAGAGTTAAACTCTTAGATATTGTGTTAGAAGATTTGGAAGGAAATAATGTGGATTGTACTTTATGGGCTGAACATGCTGAACAGATGAACACTTATTTAACTGATAATGGTTATGATAAGTCTGTGATAGTCATTTTACAGTTGTGTAAGCCTAAAATTTTTCAATCAATTCATGGCATATCAAATGCCTTTAATGGTACAAGAATCTTTATTAATAGCAATCTAAAGGAATCTCTTGAATATAAAGAGAAGTTGGAGAATGGAAATAAGTCATCAAACCAAATGATTAGTTATGTATCTAGCCAAAGCAACAATGTTTCAATGGATGATTTTCTTAAACATCCGAAAATGACTATTTTTGAAGTTCTTCAATGTTCTAAGGTTTCTACTGTTGTTGTTCTTGCCAAAACAATTGATTTTGACCACACAAAGAAATGGTATTATCAAGCATGTACTAGATGTTCAAGGAGTGTACGTACAAAAAGTGGAGATTTGTATTTTTGTGAAAGTTGCGTCGATGTTCTTCCAGCGAATCCAAGAATTAAGATACATGTTCAAGTTGCTGATGTGAGTGGATCTTCAACTTTTATACTTTTTGACAGATTGGCTACACAAGAATTAGAAAACCCCAGTCTAAACCTGTTTGAGGATAATAATGATGTCACCTTATGGCCTGCTGTTTTTAATTCATTGTTGGACAAGACTATGCTATTCAAGATTCATGTTTCCAATGGTAATATTGAAAAAAAGTGGCAAAGCTATACTGTGGTAAAAATTACTACAGATCAAAATTTGATTGATCAATTCAAAATGAAACATGACATCCATGACATGAATGATAAGGATGAAATTGATCAAGTTAGTAATAACCATACTGAAGTTGAAGACAACCTATCCAAGGAATCTATTGCTGAAGAGTTTAATCATGCTTATGACAAGAATAATATTGATGAGAGTACTCCAACCACCTTGATGAAAGGAAAGAGGGTGTTCAGTGATGTTGAAGTGCCGTCAACAACAATTGAAGAGTGTGATGTTCAAGCATCAACCACTAAAATGCCAAAGTTTGTTCATATTAAGAAGGAACCTGCAGAGTAG 1575 0.3346 MTLCLSVISDIVPPKLNWQIKVRIRSLWKVHSWNDHNTITSLEMILIDEKCSSIQASVKSTLISEFDSNLEEGSCYIISNILVGLHDPKFIMTDHKYKINFIKTTSCTKIGDVPSIPKTYFKFVTFPQILTGLDQTRAIDVIGHVIKKFDMKETMRSGIRVKLLDIVLEDLEGNNVDCTLWAEHAEQMNTYLTDNGYDKSVIVILQLCKPKIFQSIHGISNAFNGTRIFINSNLKESLEYKEKLENGNKSSNQMISYVSSQSNNVSMDDFLKHPKMTIFEVLQCSKVSTVVVLAKTIDFDHTKKWYYQACTRCSRSVRTKSGDLYFCESCVDVLPANPRIKIHVQVADVSGSSTFILFDRLATQELENPSLNLFEDNNDVTLWPAVFNSLLDKTMLFKIHVSNGNIEKKWQSYTVVKITTDQNLIDQFKMKHDIHDMNDKDEIDQVSNNHTEVEDNLSKESIAEEFNHAYDKNNIDESTPTTLMKGKRVFSDVEVPSTTIEECDVQASTTKMPKFVHIKKEPAE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02583 524 CDD RPA1_DBD_A_like 20 105 - -
Vivi1g02583 524 SUPERFAMILY Nucleic acid-binding proteins 286 420 IPR012340 -
Vivi1g02583 524 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Vivi1g02583 524 CDD RPA1_DBD_C 296 419 IPR047192 -
Vivi1g02583 524 Gene3D - 118 247 IPR012340 -
Vivi1g02583 524 Gene3D - 5 109 IPR012340 -
Vivi1g02583 524 Pfam Replication factor-A C terminal domain 296 419 IPR013955 -
Vivi1g02583 524 SUPERFAMILY Nucleic acid-binding proteins 121 247 IPR012340 -
Vivi1g02583 524 CDD RPA1_DBD_B_like 140 241 - -
Vivi1g02583 524 PANTHER OS03G0429900 PROTEIN 7 480 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g02583 524 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Vivi1g02583 524 Gene3D - 248 435 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02583 Vivi-Chr1 54442982 54445625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02583 1 359 Core DNA Replication Machinery Family AT5G08020 24.933 3.35e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02583 - - vvo:131640044 1050.04