LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g02575	ATGGAACTCACTTTTAACCACCAACAACTTGGCCTTGTTTGTGTCATACTACTCTTACCTCACCTTTGTTTCTCACAAGACTCTTTTACTGACTCAAGAGCAACATATTACGGTAGTCCAGATTGCTACGGGACCCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACAGTGAATGATGGCAGTGTTGCAGGTGTGTCTAAGCTATGGAAGAATGGTAGTGGCTGTGGTGCATGCTATCAGGTGAGGTGTAAAATACCTCAATACTGCGATGAAAATGGAGCAAACATTGTGGTAACAGACTACGGCGAAGGAGATAGAACAGACTTCATAATGAGTCCTCGCGGCTACTCAAGATTAGGGCGCAACGAAGACGCATCTGCAGAGCTCTTCAAATACGGTGTAGTAGATGTTGAATACAAAAGAGTTCCATGCATGTACAACGGCTATAACATAGTGACTCAAGTCCATGAAAACAGCAAAAACCCTGATTACTTGGCTGTTGTGGTTCTGTACGTAGATGGAATGTATGATGTCAATGCTGTTGAGATATGGCAGGAAGATTGCCAAGAATGGGAGCTAATGAGGAGGGCCTATGGAGTGGTGTTTGACTCGGCGGATCCTCCAAATGGTGAAATATATTTGAGGTTTCAAGTGAGTGGAAATGATGGTGTTTATTGGGTGCAGTCGAAGAATGCTATTCCTAGTGATTGGAAAGCTGGTGCTGCATATGACACCATGGTTCAGCTTAATTAG	759	0.4414	MELTFNHQQLGLVCVILLLPHLCFSQDSFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGSVAGVSKLWKNGSGCGACYQVRCKIPQYCDENGANIVVTDYGEGDRTDFIMSPRGYSRLGRNEDASAELFKYGVVDVEYKRVPCMYNGYNIVTQVHENSKNPDYLAVVVLYVDGMYDVNAVEIWQEDCQEWELMRRAYGVVFDSADPPNGEIYLRFQVSGNDGVYWVQSKNAIPSDWKAGAAYDTMVQLN	252

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g02575	252	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	165	247	IPR007117	-
	Vivi1g02575	252	SUPERFAMILY	Barwin-like endoglucanases	14	150	IPR036908	-
	Vivi1g02575	252	Pfam	Lytic transglycolase	64	141	IPR009009	-
	Vivi1g02575	252	SUPERFAMILY	PHL pollen allergen	154	246	IPR036749	-
	Vivi1g02575	252	CDD	DPBB_EXLB_N	30	146	-	-
	Vivi1g02575	252	PRINTS	Major pollen allergen Lol pI signature	172	187	IPR005795	GO:0005576\|GO:0019953
	Vivi1g02575	252	PRINTS	Major pollen allergen Lol pI signature	65	76	IPR005795	GO:0005576\|GO:0019953
	Vivi1g02575	252	PRINTS	Major pollen allergen Lol pI signature	223	240	IPR005795	GO:0005576\|GO:0019953
	Vivi1g02575	252	PRINTS	Major pollen allergen Lol pI signature	156	171	IPR005795	GO:0005576\|GO:0019953
	Vivi1g02575	252	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	47	151	IPR007112	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g02575	Vivi-Chr1	54355519	54356733	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g02575	10	252	Expansin Gene Family	AT4G17030	58.607	1.59e-106	306

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g02575	-		-	gmx:100779487	450.284

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