Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02575 ATGGAACTCACTTTTAACCACCAACAACTTGGCCTTGTTTGTGTCATACTACTCTTACCTCACCTTTGTTTCTCACAAGACTCTTTTACTGACTCAAGAGCAACATATTACGGTAGTCCAGATTGCTACGGGACCCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACAGTGAATGATGGCAGTGTTGCAGGTGTGTCTAAGCTATGGAAGAATGGTAGTGGCTGTGGTGCATGCTATCAGGTGAGGTGTAAAATACCTCAATACTGCGATGAAAATGGAGCAAACATTGTGGTAACAGACTACGGCGAAGGAGATAGAACAGACTTCATAATGAGTCCTCGCGGCTACTCAAGATTAGGGCGCAACGAAGACGCATCTGCAGAGCTCTTCAAATACGGTGTAGTAGATGTTGAATACAAAAGAGTTCCATGCATGTACAACGGCTATAACATAGTGACTCAAGTCCATGAAAACAGCAAAAACCCTGATTACTTGGCTGTTGTGGTTCTGTACGTAGATGGAATGTATGATGTCAATGCTGTTGAGATATGGCAGGAAGATTGCCAAGAATGGGAGCTAATGAGGAGGGCCTATGGAGTGGTGTTTGACTCGGCGGATCCTCCAAATGGTGAAATATATTTGAGGTTTCAAGTGAGTGGAAATGATGGTGTTTATTGGGTGCAGTCGAAGAATGCTATTCCTAGTGATTGGAAAGCTGGTGCTGCATATGACACCATGGTTCAGCTTAATTAG 759 0.4414 MELTFNHQQLGLVCVILLLPHLCFSQDSFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGSVAGVSKLWKNGSGCGACYQVRCKIPQYCDENGANIVVTDYGEGDRTDFIMSPRGYSRLGRNEDASAELFKYGVVDVEYKRVPCMYNGYNIVTQVHENSKNPDYLAVVVLYVDGMYDVNAVEIWQEDCQEWELMRRAYGVVFDSADPPNGEIYLRFQVSGNDGVYWVQSKNAIPSDWKAGAAYDTMVQLN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02575 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Vivi1g02575 252 SUPERFAMILY Barwin-like endoglucanases 14 150 IPR036908 -
Vivi1g02575 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Vivi1g02575 252 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Vivi1g02575 252 CDD DPBB_EXLB_N 30 146 - -
Vivi1g02575 252 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Vivi1g02575 252 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Vivi1g02575 252 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Vivi1g02575 252 PRINTS Major pollen allergen Lol pI signature 156 171 IPR005795 GO:0005576|GO:0019953
Vivi1g02575 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Vivi1g02575 252 Pfam Expansin C-terminal domain 155 236 IPR007117 -
Vivi1g02575 252 PANTHER EXPANSIN-B3 18 250 - -
Vivi1g02575 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vivi1g02575 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vivi1g02575 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vivi1g02575 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vivi1g02575 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vivi1g02575 252 Gene3D - 21 145 IPR036908 -
Vivi1g02575 252 Gene3D - 146 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02575 Vivi-Chr1 54355519 54356733 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02575 10 252 Expansin Gene Family AT4G17030 58.607 1.59e-106 306