Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02573 ATGGAGCTTGGTTTTAAGTATCAAATTAGTCTTGTTTGTGTTATACTGTTATTTTCAGTACTATGTAACTGCGAAGAATATTATGCCAAATCAAGAGCATCCTATTATGCCACCTCTGACGGCTATGGAAATTCAAGGGGAGCTTGTGGTTTCGGAGACTATGGAAAGATAGTGAATGATGGTAGTGTCGCAGCTGTTTCTGCCAAGTTGTGGAAAAATGGTGGAGGATGTGGTGCATGTTATCAAGTGAGGTGCAAAATACCACAATACTGTGATGATAATGGAGCATATGTGGTGGTAACTGACTATGGTGAGGGAGATAGGACTGATTTCATATTGAGTCCACGTGCCTTCTCAAGATTGGGGCGCAATGCAGTTACATCTGAAAAATTAAAGAAATATGGAGTGTTGGATGTTGAATACAAAAGGGTTCCTTGTACATTTAAAGGCAACAATATTGTATACCAAATCAATGAAAATAGTAGAAACCCTGGCTATTTCTCTATCAATATTCTTTATGTTGGAGGAACATACGATGTCACGGCTGTTGAAATGTGGCAGAAACAACAACACCGATGGGAAGCCATGCGTAGATCTTATGGCGCTGTTTTTGACTTTGCTAATCCACCTGAAGGTGAAATCCGATTGAAATTTCTAGTGAGTAGCAATGTTGGGTCCAATTGGGTGGTGTCACCGTTCACAATATCCGCGGGTTGGAAGGCCGGTTCTACTTATTCCACCAAGATTCACCCTTATTAA 759 0.4058 MELGFKYQISLVCVILLFSVLCNCEEYYAKSRASYYATSDGYGNSRGACGFGDYGKIVNDGSVAAVSAKLWKNGGGCGACYQVRCKIPQYCDDNGAYVVVTDYGEGDRTDFILSPRAFSRLGRNAVTSEKLKKYGVLDVEYKRVPCTFKGNNIVYQINENSRNPGYFSINILYVGGTYDVTAVEMWQKQQHRWEAMRRSYGAVFDFANPPEGEIRLKFLVSSNVGSNWVVSPFTISAGWKAGSTYSTKIHPY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02573 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vivi1g02573 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Vivi1g02573 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vivi1g02573 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vivi1g02573 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vivi1g02573 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vivi1g02573 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Vivi1g02573 252 SUPERFAMILY Barwin-like endoglucanases 14 151 IPR036908 -
Vivi1g02573 252 Gene3D - 21 146 IPR036908 -
Vivi1g02573 252 PANTHER EXPANSIN-B3 17 249 - -
Vivi1g02573 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Vivi1g02573 252 Gene3D - 147 248 IPR036749 -
Vivi1g02573 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Vivi1g02573 252 Pfam Expansin C-terminal domain 155 230 IPR007117 -
Vivi1g02573 252 SMART dpbb_1 63 141 IPR007112 -
Vivi1g02573 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02573 Vivi-Chr1 54317422 54318807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02573 9 249 Expansin Gene Family AT4G17030 51.037 4.91e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02573 - - vvo:131638174 504.597