Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02571 ATGTCTCGGTATCTTTGTTTTTCATCTCATAATTCTCTTGTTAATTGCTTATATATACCTTCAAAGTTTATTGCATTTGTTATAACTACTTGTGTTCATTGGTTCATTATATATTTAAGACAAATGGAGCTTGGTTTTAAGTATCAAATTAGCCTTGTTTGTGTTTTACTGTTATTTCCAGTACTATGTAACTGCAAAGAATATTATGCCAAATCAAGAGCATCCTATTATGGCACCTCTGACGGCTATGGAAATTCTAGGGGAGCTTGTGGTTTCGGAGACTATGGAAAGATAGTGAATGATGGCAGTGTCGCAGCTGTTTCAGCCAAGTTGTGGAAAAATGGAGGAGGATGTGGTGCATGTTATCAAGTGAGGTGCAAAATACCACAATACTGTGATGATAATGGAGCATATGTGGTGGTAACTGACTATGGTGAGGGAGATAGGACTGATTTCATATTGAGTCCACGTGCCTTTTCAAGATTGGGGCGCAGTGCAGTTACATCTGAAAAATTAAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTTCCTTGTACATTTAAAGGCAACAATATTGTATACCAAATCAATGAAAATAGTAGAAACCCTGGCTACTTCTCTATCAATATTCTTTATGTTGGAGGAACATACGATGTCACGGCTGTTGAGATATGGCAGAAACAACAACACCAATGGGAAGCCATGCGTAGATCTTATGGTGCTGTTTTTGACTTTGCTAATCCACCTGAAGGTGAAATCCGATTGAAATTTCAAGTGAGTAGCAATGTTGGGTCCAATTGGGTGGTGTCACGGTTCACAATACCCGCGGGTTGGAAGGCCGGTGCTACTTATTCCACCAAGATCCAGCCTTATTAG 882 0.39 MSRYLCFSSHNSLVNCLYIPSKFIAFVITTCVHWFIIYLRQMELGFKYQISLVCVLLLFPVLCNCKEYYAKSRASYYGTSDGYGNSRGACGFGDYGKIVNDGSVAAVSAKLWKNGGGCGACYQVRCKIPQYCDDNGAYVVVTDYGEGDRTDFILSPRAFSRLGRSAVTSEKLKKYGVLDVEYKRVPCTFKGNNIVYQINENSRNPGYFSINILYVGGTYDVTAVEIWQKQQHQWEAMRRSYGAVFDFANPPEGEIRLKFQVSSNVGSNWVVSRFTIPAGWKAGATYSTKIQPY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02571 293 Gene3D - 63 187 IPR036908 -
Vivi1g02571 293 Pfam Lytic transglycolase 105 182 IPR009009 -
Vivi1g02571 293 SUPERFAMILY Barwin-like endoglucanases 56 192 IPR036908 -
Vivi1g02571 293 CDD DPBB_EXLB_N 72 187 - -
Vivi1g02571 293 Gene3D - 188 289 IPR036749 -
Vivi1g02571 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 87 192 IPR007112 -
Vivi1g02571 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 206 288 IPR007117 -
Vivi1g02571 293 SMART dpbb_1 104 182 IPR007112 -
Vivi1g02571 293 PANTHER EXPANSIN-B3 56 291 - -
Vivi1g02571 293 Pfam Expansin C-terminal domain 196 277 IPR007117 -
Vivi1g02571 293 SUPERFAMILY PHL pollen allergen 193 287 IPR036749 -
Vivi1g02571 293 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Vivi1g02571 293 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Vivi1g02571 293 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Vivi1g02571 293 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Vivi1g02571 293 PRINTS Expansin/Lol pI family signature 274 288 IPR007118 GO:0005576
Vivi1g02571 293 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02571 Vivi-Chr1 54294664 54295990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02571 50 290 Expansin Gene Family AT4G17030 51.452 1.04e-90 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02571 - - vvo:131638174 602.053