Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02570 ATGGGTAAACAAGGACCTTGCTATCACTGTGGAGTTTCAAGCACACCACTTTGGCGTAATGGCCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCGAATTATACCCCTTTACATGCTCGAACAGAACCTAATGATTACGAAGATCAAAGAGTTTCAAGGTTAAAGATTGTATCAGTGAATAAGAACAAAGAAGTGAAATTGGTTAAACGAGAGCAGAACCATGATAATGCTTATGCTGCATCTGGATGGCTCAACCCTGAATATAATCATGGATTTCTAAAGGCTGTGGATGAGGATACTAGTAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCTGAAAGCTGTGTTCAATTTGGTGGTATCGATCCTAGTGATTTGACAGGTGCTTCTCAATCAGTGGTCTGGGATACCGTGGTGCCTTCGAAGAAGAGAACATGTGCTGGTCGTCTGAAGCATTCGTCTGTTGAAAAGCTCACGAAAGAGTTGTGTAATATTCTTCACGAACAGCAACAGCAGTCTTGTTTTTCTGCTTCTTCTGAAGAGGAACTTCTATATGAAAATGAAGCACCAATGGTCTCTGTAGAGATTGGACATGGAAGCATGCTCATTAGGCATCCTAGCTCTATAGCTCGAGATGAAGAGTCCGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAGTGAATGAGGCATATTCGTGTTATGGTTCAATTCCCATGCTTAGCGATTACACTAGCATGAATTTCTCTTCTCGGGGAGTTGCGAAGATCGAAAGCTCTGCTGGCAAAAGAATGCAGCAAGAGAAACTTGAGCGGAACAACTCTCAGCTTGAAAAACTAGAAGTTCTAGAAAATCATGATTCATCACTCTTCCAAATAGAATTAAAAGATGCAGTGAACTACGAGGAGTTTTCAAGAAACTTGACAGATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCAAAACTTCCTGATAGGGAAGGTGTATTCGATAGCTCTTTGTTGGGGGACAACCCTGAAGACCGTAAGACGCCGAAAAGGCTTGCATTGTCTAACCTGTCAAAGTCAAAATGGGTAGAACACTATAATCATCTCAAGAGTGGTGGAAACAAAGCTGGAAAATGTGATGATATGGAATCTCCTGCTGTGGAATCAAGTAATTTTGCAAATGTTAAGAGATTGCGTGTCGGCCAAAACCAAAATTTTCCAGAATTGAAGGCAACAATGAGGAGTCCCAAAAGGGTCATCATAAAAGCTAGCAGTGGCGGCAAAGAAATTGTAGAAGGCTCTAGCATCAGTGATGGCAAAGAAATTGCAGAGGGCTCTAACATCTTTGTCGACGAGAGTACTGATCACGATCTGCTGCTAGATTTTCCATCCAACAATTCTTTTCCACAGGCAGAGCTCTTGCTCCCAACTTCTAGCTCGGTTGCTCAAGGAAGCACCAGTAGTAGCTCGGTACACTCTCGTGTTACTCGTCCTTGA 1539 0.4256 MGKQGPCYHCGVSSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPNDYEDQRVSRLKIVSVNKNKEVKLVKREQNHDNAYAASGWLNPEYNHGFLKAVDEDTSNRSSSGSAISNSESCVQFGGIDPSDLTGASQSVVWDTVVPSKKRTCAGRLKHSSVEKLTKELCNILHEQQQQSCFSASSEEELLYENEAPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLVNEAYSCYGSIPMLSDYTSMNFSSRGVAKIESSAGKRMQQEKLERNNSQLEKLEVLENHDSSLFQIELKDAVNYEEFSRNLTDEEQQQLLKYLPVVDTAKLPDREGVFDSSLLGDNPEDRKTPKRLALSNLSKSKWVEHYNHLKSGGNKAGKCDDMESPAVESSNFANVKRLRVGQNQNFPELKATMRSPKRVIIKASSGGKEIVEGSSISDGKEIAEGSNIFVDESTDHDLLLDFPSNNSFPQAELLLPTSSSVAQGSTSSSSVHSRVTRP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02570 512 Coils Coil 276 296 - -
Vivi1g02570 512 MobiDBLite consensus disorder prediction 492 512 - -
Vivi1g02570 512 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vivi1g02570 512 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Vivi1g02570 512 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Vivi1g02570 512 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vivi1g02570 512 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Vivi1g02570 512 Pfam Asx homology domain 291 347 IPR028020 -
Vivi1g02570 512 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vivi1g02570 512 PANTHER OSJNBB0038F03.10 PROTEIN 1 506 IPR044589 -
Vivi1g02570 512 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02570 Vivi-Chr1 54273040 54277662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02570 1 488 C2C2-Gata Transcription Factor Family AT4G17570 47.628 1.01e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g02570 ASXH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02570 - - vvo:131638144 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03646 2 145923727 145928077 Vivi1g02570 1 54273040 54277662 PCT