Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02558 ATGGGTTTACAAAACCAACTAAACGACGTGTCGTCGGACTCAATCCCCCTCCTCGTGCTGATGCACATCGCCACCGTCGTCAACTACATCCGCACGATGCTTCTTTCTCTCTTCCAATCCATCGGCCTCTCGCGTCTCCAAACCGATCAGATCGTCGACGACCACTTCCTCGCCGCCGTCGGATCAGGTCTCGCCGGAATCATCCTCCTCTCCGATCAACTAACGCTCAACAACCAACACTTCTACACCTACGAAGACGCCGCTTCGGCTGACAACCACCGCTGCGTGTTTTGTCAATCAACTTTCGAGAACGGCGACCACGTCCGGAAGCTTCCCTGCCGCCACGTCTTCCACCGCTACTGTCTCAACGGGTGGTTTCATCGGTACAACTTCAATTGTCCGTTGTGCCGATCTTCGCTTGTCTCCGACGAGCGCGTGGCGCTCACCGAACGCCGTGTCGGTAGCCAACTCATCTCGTGGTTCACTCTTCGCTGA 495 0.5616 MGLQNQLNDVSSDSIPLLVLMHIATVVNYIRTMLLSLFQSIGLSRLQTDQIVDDHFLAAVGSGLAGIILLSDQLTLNNQHFYTYEDAASADNHRCVFCQSTFENGDHVRKLPCRHVFHRYCLNGWFHRYNFNCPLCRSSLVSDERVALTERRVGSQLISWFTLR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02558 164 SUPERFAMILY RING/U-box 75 143 - -
Vivi1g02558 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 78 147 - -
Vivi1g02558 164 Pfam Ring finger domain 94 137 IPR001841 -
Vivi1g02558 164 SMART ring_2 95 136 IPR001841 -
Vivi1g02558 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 142 IPR013083 -
Vivi1g02558 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02558 Vivi-Chr1 54057839 54058699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02558 1 163 C3H Transcription Factor Family AT1G15100 50.307 3.94e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02558 K16282 - gmx:100803789 239.965