Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02540 ATGTATCAAAACAATAATTTTGATTCCGATTTTGCCCTTCTAGACTCTATTCGCCGCCACTTGTTGGGTGAGTCCGAATCAATATTCGGAGCTCCAACAACTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGCTTGTATCCATGTTTGAGTGATAATTGGGGTGAGTTACCTCTCAAAGAAGATGATTCTGAAGATATGTTGCTCTACGGCGTCCTTCGTGACGCCGTAAATGTCGGGTGGGTTCCGTCTCTTGAAGTCGGATCACCCGAGAGCATTTCATCGGGTTTTCCGTTGGAATTAACGGTAAAACCCGAGCCAGATGTCATGCCGGTTGAGAATATTCCCATGGTGGTGCCTACGGCGGTTCAGGTGGTTCCGAAGGGACCCAAAGCTGCTCCGGTTAAAGGTAAGCACTACCGCGGGGTGAGACAACGGCCGTGGGGAAAATTCGCGGCGGAGATTCGTGACCCGGCTAAGAACGGAGCTAGGGTTTGGCTTGGAACATTTGAAACCGCTGAGGATGCAGCTTTGGCTTACGATAGAGCTGCGTATAGGATGAGAGGTTCGAGGGCTTTGCTGAATTTTCCTCTTCGGGTTAACTCCGGCGAACCCGACCCGGTAAGGATTACTTCTAAAAGATCTTCGCCGGAACGTTCTTCTTCGTCTTCATTATCGTCGGAGAGTAATTCTCCGGCGAAGAAGAAGAAGGTAATGGGAGGTCAAGTGGCACAGTTGACACGTGGAGGACAGTTGTTGGTTTCTTAA 774 0.4948 MYQNNNFDSDFALLDSIRRHLLGESESIFGAPTTNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMLLYGVLRDAVNVGWVPSLEVGSPESISSGFPLELTVKPEPDVMPVENIPMVVPTAVQVVPKGPKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRSSPERSSSSSLSSESNSPAKKKKVMGGQVAQLTRGGQLLVS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02540 257 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Vivi1g02540 257 Pfam AP2 domain 141 191 IPR001471 GO:0003700|GO:0006355
Vivi1g02540 257 Gene3D AP2/ERF domain 140 202 IPR036955 GO:0003700|GO:0006355
Vivi1g02540 257 MobiDBLite consensus disorder prediction 216 235 - -
Vivi1g02540 257 PANTHER DNA-BINDING DOMAIN 132 233 IPR044808 GO:0003700|GO:0009873
Vivi1g02540 257 FunFam Ethylene-responsive transcription factor 2 140 200 - -
Vivi1g02540 257 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Vivi1g02540 257 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Vivi1g02540 257 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vivi1g02540 257 PRINTS Ethylene responsive element binding protein signature 165 181 IPR001471 GO:0003700|GO:0006355
Vivi1g02540 257 MobiDBLite consensus disorder prediction 205 257 - -
Vivi1g02540 257 SUPERFAMILY DNA-binding domain 141 201 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02540 Vivi-Chr1 53409131 53410338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02540 1 256 AP2-EREBP Transcription Factor Family AT4G17500 50.000 2.38e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02540 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02540 K09286 - gmx:100803653 315.079