Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02539 ATGGCTAACGCTGAAGAAGTTTCAGCTCTTAAAAGCATCAAATTGCATCTCCTTGGTGAATTTTCACCACTTCCATCTCCAATCTCACAACCTTGGAGCTTTGATTTTGATTTTCAATTTCAAACTAACCAAAACAATTATGATTCTTCAATTTCTTTGGATCATTGCTTCAATAATCTTATTGAAACAGAGACACAGATTCCGATCTTCGAATTTGAATCCAAACCTCAATTGATTGAACCAGCTAGTCCTGAAGCCCTAATTTCTCATCCTCAACAAACAGTAGAGAAGAAGCCTCAACTGAATCGTAAACCGTCGCTGAAAATCGCTCTTCCAAATAAAACCGAATGGATCCAATTCGGAAACCCGAATCCGATTCAAGAGACGGTTGTGCCAAAACCGGAAGTTGTTGAGAAACAGCACTATAGAGGAGTTAGACAGAGACCGTGGGGAAAGTTCGCCGCCGAGATCCGCGACCCTAACAAACGCGGCTCAAGAGTTTGGCTTGGAACTTTCGAGACGGCTATCGAAGCCGCTAAAGCCTACGATCGTGCCGCGTTTAGGCTGCGCGGATCTAAAGCGATTCTCAATTTTCCACTAGAAGTCAACGCCATGGCGGCGGAGGCGGCGGCGGTGAAGAATACCGGCGAGAACAAAAAACGTTGCCGTGAAGAGGAAGAGGATGAAGTAGTGGAAGTGAAACCGGTGGTGAAAAAGGAGAAAACGGAGGAATATGATGTGAACTGTATTAAAGAGATGCCGTTAACGCCGTCAGCTTGGACTGGGTTTTGGGACAGTGATTTTAAGGGGTTTCCACCGTTGTCGCCGTTATCTTCCTTTTGTTTTTCACCTTTAGTGGCCGTGTGA 867 0.451 MANAEEVSALKSIKLHLLGEFSPLPSPISQPWSFDFDFQFQTNQNNYDSSISLDHCFNNLIETETQIPIFEFESKPQLIEPASPEALISHPQQTVEKKPQLNRKPSLKIALPNKTEWIQFGNPNPIQETVVPKPEVVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAMAAEAAAVKNTGENKKRCREEEEDEVVEVKPVVKKEKTEEYDVNCIKEMPLTPSAWTGFWDSDFKGFPPLSPLSSFCFSPLVAV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02539 288 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Vivi1g02539 288 PANTHER DNA-BINDING DOMAIN 104 219 IPR044808 GO:0003700|GO:0009873
Vivi1g02539 288 FunFam Ethylene-responsive transcription factor 2 140 201 - -
Vivi1g02539 288 Gene3D AP2/ERF domain 140 202 IPR036955 GO:0003700|GO:0006355
Vivi1g02539 288 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Vivi1g02539 288 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vivi1g02539 288 Pfam AP2 domain 141 191 IPR001471 GO:0003700|GO:0006355
Vivi1g02539 288 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Vivi1g02539 288 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Vivi1g02539 288 SUPERFAMILY DNA-binding domain 141 201 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02539 Vivi-Chr1 53318550 53319644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02539 1 278 AP2-EREBP Transcription Factor Family AT4G17490 45.946 1.55e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02539 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02539 K09286 - gmx:100800453 311.612