Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02538 ATGGCTAACGCGGAAGAAGTTTCAGCTCTTGAAAGTATCAAATTGCATCTTCTTGGAGAATTTTCTCCACTTCCATCTCCTATTTCACAACCTTCGAGCCTTGATTTTGATTTTCAATTTCAACCAAACCAAAACAATTATGATTCTTCAATCTCTTTGGATCATTATTTCACCGAACTTTTCGAATTTGATTCCAAACCCCAAACAGTCGAACCAGAAAGCCTCGAACCCCTAACATCTAATCCTCAACAAATGAAGAAGCCTCAACTGAAGCAAAAACCGTCGCTGGAAATCGCTCTCCCGAATAAAACCGAATGGATTCAATTCAGAAAACCAGATCCGAAACCGGAAGTTGTTGAGAAACAGCACTACAGAGGAGTTAGACAGAGACCGTGGGGAAAATTCGCCGCCGAGATCCGAGACCCTAACAAGCGTGGCTCAAGGCTTTGGCTTGGAACTTTCGAAACGGCTATGGAAGCCGCTAAAGCCTACGATCGTGCAGCTTTCAGGCTGCGAGGCACTAAAGCGATTCTCAACTTTCCACTTGAAGTCAACGACATGGCGGTGGCGGAAACCTCCGGCAACAAAAAACGTTGCCGTGAAGAGGAAGAGGAAGATGTGGTGGAGGTGAAACCGGTGGTGAAAAAGGAGAAAACAATGGAATTCGATGTGAACTGTTTTAAAGATAAGCCGTTAACACCGTCTACATGGACTGACTTTTGGGATGTTGATTTTAAGGGGATGTTCGGTGTTTCGCCGTTATTATCGCCGTTATCTTCCGTTTGCTTTTCACCTCTAGTGGTTGTGTGA 810 0.4457 MANAEEVSALESIKLHLLGEFSPLPSPISQPSSLDFDFQFQPNQNNYDSSISLDHYFTELFEFDSKPQTVEPESLEPLTSNPQQMKKPQLKQKPSLEIALPNKTEWIQFRKPDPKPEVVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFETAMEAAKAYDRAAFRLRGTKAILNFPLEVNDMAVAETSGNKKRCREEEEEDVVEVKPVVKKEKTMEFDVNCFKDKPLTPSTWTDFWDVDFKGMFGVSPLLSPLSSVCFSPLVVV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02538 269 PRINTS Ethylene responsive element binding protein signature 163 183 IPR001471 GO:0003700|GO:0006355
Vivi1g02538 269 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vivi1g02538 269 FunFam Ethylene-responsive transcription factor 2 122 183 - -
Vivi1g02538 269 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Vivi1g02538 269 MobiDBLite consensus disorder prediction 72 90 - -
Vivi1g02538 269 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Vivi1g02538 269 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Vivi1g02538 269 SUPERFAMILY DNA-binding domain 123 183 IPR016177 GO:0003677
Vivi1g02538 269 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
Vivi1g02538 269 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Vivi1g02538 269 MobiDBLite consensus disorder prediction 68 90 - -
Vivi1g02538 269 PANTHER DNA-BINDING DOMAIN 89 200 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02538 Vivi-Chr1 53304119 53305159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02538 1 269 AP2-EREBP Transcription Factor Family AT5G47230 44.951 1.34e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g02538 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02538 K09286 - gmx:100816039 291.582