Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02536 ATGGCTAACGCCGAAGAAGTTTCAGCTCTTAAAAGCATCAAATATCATCTCCTTGGTGAATTTTCACCACTTCCATCTCCAATTTCACAACCTTGGAGCTTTGATTTTGATTTTCAATTTCAAACCAACCAAACCAATCATGATTCTTCAATCTCTTTGGATCATTATTTCAATAATCTTATGGAAACAGAGACACAGATTCCGATCTTTGAGTTTGACTCCAAACCTCAAACAACTGAACCTGAGAGCCCTAAAGCCCTAATTTCTCAACCTCAGCCAACAGTAGAGAAGAATTCTCAACTGAAGAGAAAACCTTCGTTGGAAATTGCTCTCCCGAATAAAACCGAATGGATCCAATTCAGTAAACCAGATCCGAAACCGGAAGTGGTTGTGCAGAAACCGGAAGTTGTTGAGAAACAGCACTACAGAGGAGTTAGACAGAGACCGTGGGGAAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGCTCGAGACTGTGGCTTGGAACTTTCGAAACGGCTATCGAAGCCGCTAAAGCGTACGATCGTGCAGCTTTTAGGCTGCGCGGATCTAAAGCGATTCTCAACTTTCCACTTGAAGTCAACGCCATGGCAGTGGCGGCAGCGGAGGCGGCGGAGAACTCCGGTGACAATAAAAAACGTTGCCGTGAACAGGAAGATGATGAAGTGGTGGAAGTGAAACCGGTGGTGAAAAAGGAGAAAACGGAGGAATTTGATGTGAACTGTATTAAAGAGATGCCGTTAACGCCGTCAAGTTGGACTGGGTTTTGGGACTGTGATTTTAAGGGGATTCCACCGTTCTCGCCGTTATCTTCCTTTTGTTTTTCACCTCTAGTGGCTGTGTGA 870 0.4563 MANAEEVSALKSIKYHLLGEFSPLPSPISQPWSFDFDFQFQTNQTNHDSSISLDHYFNNLMETETQIPIFEFDSKPQTTEPESPKALISQPQPTVEKNSQLKRKPSLEIALPNKTEWIQFSKPDPKPEVVVQKPEVVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRLWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAMAVAAAEAAENSGDNKKRCREQEDDEVVEVKPVVKKEKTEEFDVNCIKEMPLTPSSWTGFWDCDFKGIPPFSPLSSFCFSPLVAV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02536 289 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Vivi1g02536 289 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Vivi1g02536 289 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vivi1g02536 289 PANTHER DNA-BINDING DOMAIN 99 221 IPR044808 GO:0003700|GO:0009873
Vivi1g02536 289 MobiDBLite consensus disorder prediction 74 102 - -
Vivi1g02536 289 FunFam Ethylene-responsive transcription factor 2 140 201 - -
Vivi1g02536 289 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Vivi1g02536 289 MobiDBLite consensus disorder prediction 74 100 - -
Vivi1g02536 289 Pfam AP2 domain 141 191 IPR001471 GO:0003700|GO:0006355
Vivi1g02536 289 Gene3D AP2/ERF domain 140 202 IPR036955 GO:0003700|GO:0006355
Vivi1g02536 289 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Vivi1g02536 289 SUPERFAMILY DNA-binding domain 141 201 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02536 Vivi-Chr1 53256413 53257467 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02536 1 289 AP2-EREBP Transcription Factor Family AT5G47230 42.284 9.42e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02536 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02536 K09286 - gmx:100800453 303.523